1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CATGCCGTCTTTTTCTGCCTCAGCCTTTTAACTCCAGCATTCGGCAGAGCTACATTTTATGTTGAAAAGTGCTCAAGGATGCCATTTTTCCTTGTGTCAGgtaagtcatagtttctccttactctctaatacgaattgggctctaggaatgaaaagaagccttccttctaattggattggtggtaaacaattttataata...
species | Oryza sativa |
transcript | LOC_Os02g17280.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCATTTTTCCTTGTGTCAG CCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTGEST: gi|88255900|gb|CI354724.1|CI354724
genomic: CCATTTTTCCTTGTGTCAGgtaagtcata ... ctgtttgcagCCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTG
EST: TTTCCTTGTGTCAC CCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTGEST: gi|88205852|gb|CI205701.1|CI205701
genomic: TTTCCTTGTGTCAGgtaagtcata ... ctgtttgcagCCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTG
EST: GAAAAGTGCTCAAGGATGCCATTTTTCCTTGTGTCAG CCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTGEST: gi|58677083|gb|CK065770.1|CK065770
genomic: GAAAAGTGCTCAAGGATGCCATTTTTCCTTGTGTCAGgtaagtcata ... ctgtttgcagCCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTG
EST: CACATTTTATGTTGAAAAGTGCTCAAGGATGCCATTTTTCCTTGTGTCAG CCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTGEST: gi|89187835|gb|CI009819.1|CI009819
genomic: TACATTTTATGTTGAAAAGTGCTCAAGGATGCCATTTTTCCTTGTGTCAGgtaagtcata ... ctgtttgcagCCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTG
EST: TACATTTTATGTTGAAAAGTGCTCAAGGATGCCATTTTTCCTTGTGTCAG CCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTGEST: gi|86886214|gb|CI321250.1|CI321250
genomic: TACATTTTATGTTGAAAAGTGCTCAAGGATGCCATTTTTCCTTGTGTCAGgtaagtcata ... ctgtttgcagCCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTG
EST: TACATTTTATGTTGAAAAGTGCTCAAGGATGCCATTTTTCCTTGTCTCAG CCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTGEST: gi|88273370|gb|CI393776.1|CI393776
genomic: TACATTTTATGTTGAAAAGTGCTCAAGGATGCCATTTTTCCTTGTGTCAGgtaagtcata ... ctgtttgcagCCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTG
EST: ACATTTTATGTTGAAAAGTGCTCAAGGATGCCATTTTTCCTTGTGTCAG CCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTGEST: gi|396941389|gb|HO188598.1|HO188598
genomic: ACATTTTATGTTGAAAAGTGCTCAAGGATGCCATTTTTCCTTGTGTCAGgtaagtcata ... ctgtttgcagCCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTG
EST: CACATTTTATGTTGAAAAGTGCTCAAGGATGCCATTTTTCCTTGTGTCAG CCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTG
genomic: TACATTTTATGTTGAAAAGTGCTCAAGGATGCCATTTTTCCTTGTGTCAGgtaagtcata ... ctgtttgcagCCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCCGTCTTTTTCTGCCTCAGCCTTTTAACTCCAGCATTCGGCAGAGCTACATTTTATGTTGAAAAGTGCTCAAGGATGCCATTTTTCCTTGTGTCAGgtaagtcatagtttctccttactctctaatacgaattgggctctaggaatgaaaagaagccttccttctaattggattggtggtaaacaattttataata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa