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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAACTTGCAGTGAGTACTCTATGCAAGCATACAAAAAATACGGTGTTGCAAAGGGTACAATCTTGACAGCTTGGCGTCTATGCCGCTGTAATCCTCTTGgtatgtaggttttttcgttggttcatagttcttttgatttcttcgacagtcgcagtctgcacctgcatcatatcatatttattaaatttcttttacaataaacaaacag

Basic information

species Oryza sativa
transcript LOC_Os02g15970.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g15970.5 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G819212_T01 (Zea mays), 5'ss of exon 4
CCAACTTGCAGTGAGTACTCTATGCAAGCATACAAAAAATACGGTGTTGCAAAGGGTACAATCTTGACAGCTTGGCGTCTATGCCGCTGTAATCCTCTTGgtatgtaggttttttcgttg--gttcatagttcttttgatttctt--cgacagtcgca---gtctgcacctgcatcatatcatatttatt-----aaattt---cttttacaataaacaaacag
|||||||||||||||||||||||||| || ||||||  ||| ||||||| ||||||| | |||||||| |||||||| || ||||| ||||||||||||||||||||| ||||||  |    || | ||||| | |   ||  ||  |     ||  |   || |  | |||  ||| || | ||||| |       | ||   | | |   ||  | |  |||
CCAACTTGCAGTGAGTACTCTATGCAGGCGTACAAACGATATGGTGTTGTAAAGGGTTCCATCTTGACTGCTTGGCGCCTTTGCCGTTGTAATCCTCTTGgtatgtagttttttttctctatgtgcttagttatctctgttgtttgacatttttcatatatgtatagatctgtgtcacataacatttaatttgtgggacttagacctctctgatttatatgcag

upper sequence: LOC_Os02g15970.5 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv08s0007g00520.t01 (Vitis vinifera), 5'ss of exon 3
CCAACTTGCAGTGAGTACTCTATGCAAGCATACAAAAAATACGGTGTTGCAAAGGGTACAATCTTGACAGCTTGGCGTCTATGCCGCTGTAATCCTCTTGgtatg----taggttttttcg-----ttggtt------catagttcttttgatttcttcgac--agtcgcagtctgcacctgcatcatatcatatttattaaatttcttttaca---ataaacaaacag--------------------
|| || || |||||||| || ||| |||| || || ||||| || |||| |||||| ||  |||||||  |||||||||| |||||||||||||| |||||||          | |||| |     |||  |      || | |||| |    || |  |||  |||    || ||     |  || ||  |  | ||||  |  || |   ||    |||| |   ||                    
CCCACATGTAGTGAGTATTCCATGGAAGCCTATAAGAAATATGGAGTTGTAAAGGGCACCGTCTTGACCACTTGGCGTCTCTGCCGCTGTAATCCCCTTGgtacaatttctactctttttgcaatcttgaataccatacaaaattctgtgctcttttctgacctagttatggtatgttttcg-gtcttaaga-gtatatttcacctcatgggcatctgtaaatatgaagccaattatattcttttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33815594|gb|CF333649.1|CF333649
EST:     AAAGGGTACAATCTTGACAGCTTGGCGTCTATGCCGCTGTAATCCTCTTG                         GTGGTCATGGATATGATCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAA
genomic: AAAGGGTACAATCTTGACAGCTTGGCGTCTATGCCGCTGTAATCCTCTTGgtatgtaggt ... aaacaaacagGTGGTCATGGATATGATCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAA