1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAGATTCTCCCGGTAGATCATACAGAGTTGAGATGTCCGGTAAAGTGTCGGATGAAGTCTCTGGTGAGGAGCTGTATTGTCTCGGCAAACTTGCACCAACgtaagtaacttaacaacatcaaataatgccattgtacttcaaaattctaatgcgcatttagtaatcactgtttcaatcattgtagagctgctgtcagaaa...
species | Oryza sativa |
transcript | LOC_Os02g15820.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATGAAGTCTCTGGTGAGGAGCTGTATTGTCTCGGCAAACTTGCACCAAC CGTCGAGAAAATGAAGCGCGGATTTGGCATGAGAGTCCCCAGAATCATCCCEST: gi|86488892|gb|CI131525.1|CI131525
genomic: GATGAAGTCTCTGGTGAGGAGCTGTATTGTCTCGGCAAACTTGCACCAACgtaagtaact ... ctgtaaacagCGTCGAGAAAATGAAGCGCGGATTTGGCATGAGAGTCCCCAGAATCATCCC
EST: GATGAAGTCTCTGGTGAGGAGCTGTATTGTCTCGGCAAACTTGCACCAAC CGTCGAGAAAATGAAGCGCGGATTTGGCATGAGAGTCCCCAGAATCATCCCEST: gi|89167789|gb|CI021488.1|CI021488
genomic: GATGAAGTCTCTGGTGAGGAGCTGTATTGTCTCGGCAAACTTGCACCAACgtaagtaact ... ctgtaaacagCGTCGAGAAAATGAAGCGCGGATTTGGCATGAGAGTCCCCAGAATCATCCC
EST: GATGAAGTCTCTGGTGAGGAGCTGTATTGTCTCGGCAAACTTGCACCAAC CGTCGAGAAAATGAAGCGCGGATTTGGCATGAGAGTCCCCAGAATCATCCCEST: gi|88838252|gb|CI373612.1|CI373612
genomic: GATGAAGTCTCTGGTGAGGAGCTGTATTGTCTCGGCAAACTTGCACCAACgtaagtaact ... ctgtaaacagCGTCGAGAAAATGAAGCGCGGATTTGGCATGAGAGTCCCCAGAATCATCCC
EST: GATGAAGTCTCTGGTGAGGAGCTGTATTGTCTCGGCAAACTTGCACCAAC CGTCGAGAAAATGAAGCGCGGATTTGGCATGAGAGTCCCCAGAATCATCCCEST: gi|88908433|gb|CI091026.1|CI091026
genomic: GATGAAGTCTCTGGTGAGGAGCTGTATTGTCTCGGCAAACTTGCACCAACgtaagtaact ... ctgtaaacagCGTCGAGAAAATGAAGCGCGGATTTGGCATGAGAGTCCCCAGAATCATCCC
EST: GATGAAGTCTCTGGTGAGGAGCTGTATTGTCTCGGCAAACTTGCACCAAC CGTCGAGAAAATGAAGCGCGGATTTGGCATGAGAGTCCCCAGAATCATCCCEST: gi|86437342|gb|CI119064.1|CI119064
genomic: GATGAAGTCTCTGGTGAGGAGCTGTATTGTCTCGGCAAACTTGCACCAACgtaagtaact ... ctgtaaacagCGTCGAGAAAATGAAGCGCGGATTTGGCATGAGAGTCCCCAGAATCATCCC
EST: GATGAAGTCTCTGGTGAGGAGCTGTATTGTCTCGGCAAACTTGCACCAAC CGTCGAGAAAATGAAGCGCGGATTTGGCATGAGAGTCCCCAGAATCATCCC
genomic: GATGAAGTCTCTGGTGAGGAGCTGTATTGTCTCGGCAAACTTGCACCAACgtaagtaact ... ctgtaaacagCGTCGAGAAAATGAAGCGCGGATTTGGCATGAGAGTCCCCAGAATCATCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGATTCTCCCGGTAGATCATACAGAGTTGAGATGTCCGGTAAAGTGTCGGATGAAGTCTCTGGTGAGGAGCTGTATTGTCTCGGCAAACTTGCACCAACgtaagtaacttaacaacatcaaataatgccattgtacttcaaaattctaatgcgcatttagtaatcactgtttcaatcattgtagagctgctgtcagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT