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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCTTAAGACAAGCACGTATACATGGGAGAATCTATTTGCTGTTTTCGTCTCGACATCAGGTCTAGTTTTGTTTGCACTCCTTATTGGTAATGTGCAGgtatggaatatatcaactgtcatatttttattatgatcataattggattaagtagttaatattttttatatatgcaacttgtgtggagtatcttttttaa...

Basic information

species Oryza sativa
transcript LOC_Os02g15580.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g15580.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G148118_T02 (Zea mays), 5'ss of exon 5
AAATCTTAAGACAAGCACGTATACATGGGAGAATCTATTTGCTGTTTTCGTCTCGACATCAGGTCTAGTTTTGTTTGCACTCCTTATTGGTAATGTGCAGgtatggaatatat-------caactgtcatatttttattatgatcataattggattaagtagttaatattttttatatatgcaacttgtgtggagtatcttttttaa
 ||  | || ||||||||  |||||| ||||||||| ||||||||||| ||||||||||| ||| | ||| | |||||||| |||||||||||||||||||||  ||   |||       |   ||  || || || | |||    |  ||  ||||||| || | || ||  |||  ||    |     |   | |          
GAACATGAAAACAAGCACTAATACATTGGAGAATCTGTTTGCTGTTTTTGTCTCGACATCGGGTTTGGTTCTATTTGCACTACTTATTGGTAATGTGCAGgtacagacactattttggcactgttgatattttcttgtaatgtatgttgttcaattaagtggtaactaattagtattaataaggccaacatatggaaatg-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29685098|gb|CB681373.1|CB681373
EST:     TCTCGACATCACGTCTAGTTTTGTTTGCACTCCTTATTGGTAATGTGCAG                         ACCTATCTACAATCTGCCTCTGTGCGTATAGAAGAAATGAGAGTGAAACGG
genomic: TCTCGACATCAGGTCTAGTTTTGTTTGCACTCCTTATTGGTAATGTGCAGgtatggaata ... tattttgcagACCTATCTACAATCTGCCTCTGTGCGTATAGAAGAAATGAGAGTGAAACGG
EST: gi|29680723|gb|CB676998.1|CB676998
EST:     TCTCGACATCAGGTCTAGTTTTGTTTGCACTCCTTATTGGTAATGTGCAG                         ACCTATCTACAATCTGCCTCTGTGCGTATAGAAGAAATGAGAGTGAAACGG
genomic: TCTCGACATCAGGTCTAGTTTTGTTTGCACTCCTTATTGGTAATGTGCAGgtatggaata ... tattttgcagACCTATCTACAATCTGCCTCTGTGCGTATAGAAGAAATGAGAGTGAAACGG
EST: gi|29677007|gb|CB673282.1|CB673282
EST:     TCTCGACATCAGGTCTAGTTTTGTTTGCACTCCTTATTGGTAATGTGCAG                         ACCTATCTACAATCTGCCTCTGTGCGTATAGAAGAAATGAGAGTGAAACGG
genomic: TCTCGACATCAGGTCTAGTTTTGTTTGCACTCCTTATTGGTAATGTGCAGgtatggaata ... tattttgcagACCTATCTACAATCTGCCTCTGTGCGTATAGAAGAAATGAGAGTGAAACGG