1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTCATTGAACTTCCTATCAAACATCCAGAGCTATTTGAGAGTCTTGGAATTGCCCAACCAAAGgtttgaacttcttaacaatatcatcttaaacgatcctatttttaagtattagcagaaaatattaactctcttttttcag
species | Oryza sativa |
transcript | LOC_Os02g11050.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTATCAAACATCCAGAGCTATTTGAGAGTCTTGGAATTGCCCAACCAAAG GGTGTCCTTCTCTATGGCCCTCCAGGCACAGGAAAAACATTGTTGGCACGTEST: gi|58673687|gb|CK062373.1|CK062373
genomic: CTATCAAACATCCAGAGCTATTTGAGAGTCTTGGAATTGCCCAACCAAAGgtttgaactt ... cttttttcagGGTGTCCTTCTCTATGGCCCTCCAGGCACAGGAAAAACATTGTTGGCACGT
EST: CTATCAAACATCCAGAGCTATTTGAGAGTCTTGGAATTGCCCAACCAAAG GGTGTCCTTCTCTATGGCCCTCCAGGCACAGGAAAAACATTGTTGGCACGTEST: gi|163918429|gb|EG711419.1|EG711419
genomic: CTATCAAACATCCAGAGCTATTTGAGAGTCTTGGAATTGCCCAACCAAAGgtttgaactt ... cttttttcagGGTGTCCTTCTCTATGGCCCTCCAGGCACAGGAAAAACATTGTTGGCACGT
EST: AGCTATTTGAGAGTCTTGGAATTGCCCAACCAAAG GGTGTCCTTCTCTATGGCCCTCCAGGCACAGGAAAAACATTGTTGGCACGTEST: gi|58599645|gb|CK010173.1|CK010173
genomic: AGCTATTTGAGAGTCTTGGAATTGCCCAACCAAAGgtttgaactt ... cttttttcagGGTGTCCTTCTCTATGGCCCTCCAGGCACAGGAAAAACATTGTTGGCACGT
EST: CTATCAAACATCCAGAGCTATTTGAGAGTCTTGGAATTGCCCAACCAAAG GGTGTCCTTCTCTATGGCCCTCCAGGCACAGGAAAAACATTGTTGGCACGTEST: gi|58678290|gb|CK066977.1|CK066977
genomic: CTATCAAACATCCAGAGCTATTTGAGAGTCTTGGAATTGCCCAACCAAAGgtttgaactt ... cttttttcagGGTGTCCTTCTCTATGGCCCTCCAGGCACAGGAAAAACATTGTTGGCACGT
EST: CTATCAAACATCCAGAGCTATTTGAGAGTCTTGGAATTGCCCAACCAAAG GGTGTCCTTCTCTATGGCCCTCCAGGCACAGGAAAAACATTGTTGGCACGTEST: gi|428036|gb|D24184.1|D24184
genomic: CTATCAAACATCCAGAGCTATTTGAGAGTCTTGGAATTGCCCAACCAAAGgtttgaactt ... cttttttcagGGTGTCCTTCTCTATGGCCCTCCAGGCACAGGAAAAACATTGTTGGCACGT
EST: CTATCAAACATCCAGAGCTATTTGAGAGTCTTGGAATTGCCCAACCAAAG GGTGTCCTTCTCTATGGCCCTCCAGGCACAGGAAAAACATTGTTGGCACGT
genomic: CTATCAAACATCCAGAGCTATTTGAGAGTCTTGGAATTGCCCAACCAAAGgtttgaactt ... cttttttcagGGTGTCCTTCTCTATGGCCCTCCAGGCACAGGAAAAACATTGTTGGCACGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCATTGAACTTCCTATCAAACATCCAGAGCTATTTGAGAGTCTTGGAATTGCCCAACCAAAGgtttgaacttcttaacaatatcatcttaaacgatcctatttttaagtattagcagaaaatattaactctcttttttcag
- - - - - - - - - - - - - AGAGCT