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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAAgtacgcatcccatagattcggatagttatcaaattcctgtcagattacgagatagttttattactattgtttgaatgattgaatatattagtgttattgg...

Basic information

species Oryza sativa
transcript LOC_Os02g10310.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29643533|gb|CB648540.1|CB648540
EST:     GGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAA                         AGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAA
genomic: GGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAAgtacgcatcc ... tgccttttagAGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAA
EST: gi|88324389|gb|CI566202.1|CI566202
EST:     GGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAA                         AGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTTC
genomic: GGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAAgtacgcatcc ... tgccttttagAGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAA
EST: gi|4969133|gb|AU066037.1|AU066037
EST:     GGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAA                         AGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAA
genomic: GGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAAgtacgcatcc ... tgccttttagAGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAA
EST: gi|27548667|gb|CA766758.2|CA766758
EST:     GGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAA                         AGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAA
genomic: GGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAAgtacgcatcc ... tgccttttagAGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAA