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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGAGTCTGCTTATGGCCAGTTTGAGTCTCATGACTTCTCAAAAGTCCTGGATTACATCAACAAAATTGTGCTTGTTTTTTCTCCAGACTGCTTAAAGgtatatttcagaggatagtaggaaccatggacagataaatatttcatctaattttgtctcagtaagctgcagtactaaaaatggatttttcag

Basic information

species Oryza sativa
transcript LOC_Os02g10180.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g10180.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G341404_T01 (Zea mays), 5'ss of exon 4
ATTAGAGTCTGCTTATGGCCAGTTTGAGTCTCATGACTTCTCAAAAGTCCTGGATTACATCAACAAAATTGTGCTTGTTTTTTCTCCAGACTGCTTAAAGgtatatttcagaggatagtaggaaccatggacagataaatatttcatctaattttgtctcagtaagctgcagtactaaaaatggatttttcag
|||| | |||||||||||||| || || |||   ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||  ||||||||||| |  |                   | ||| ||  |||  || |||||||   | ||||  |   |||  || ||||| || || ||| |||
ATTACAATCTGCTTATGGCCAATTCGATTCTGGAGACTTCTCAAAAGTCGTGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgat-------------------acggataggcaaa--ttccatctaaccctttctccttggtctgtggtgctaaagattgaatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29664002|gb|CB660277.1|CB660277
EST:     TGGATTACATCAACAAAATTGTGCTTGTTTTTTCTCCAGACTGCTTAAAG                         GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTAAAGACTACTCAACT
genomic: TGGATTACATCAACAAAATTGTGCTTGTTTTTTCTCCAGACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTAAAGACTACTCAACT
EST: gi|29685029|gb|CB681304.1|CB681304
EST:     TGGATTACATCAACAAAATTGTGCTTGTTTTTTCTCCAGACTGCTTAAAG                         GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTAAAGACTACTCAACT
genomic: TGGATTACATCAACAAAATTGTGCTTGTTTTTTCTCCAGACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTAAAGACTACTCAACT
EST: gi|29663959|gb|CB660234.1|CB660234
EST:     TGGATTACATCAACAAAATTGTGCTTGTTTTTTCTCCAGACTGCTTAAAG                         GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTAAAGACTACTCAACT
genomic: TGGATTACATCAACAAAATTGTGCTTGTTTTTTCTCCAGACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTAAAGACTACTCAACT