1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GCATGATTTAATTATCTCACACAAGGAAGAACTTGCACTTCTCATGACACTGGAGCAAGGGAAACCTATGAAAGAGGCTCTTGTTGAGgtactttctaaaatactgcgctgatattcgttagttggaatatgtgattctaaagccttactggagactcattggttgctataaatattcag
species | Oryza sativa |
transcript | LOC_Os02g07760.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCTCATGACACTGGAGCAAGGGAAACCTATGAAAGAGGCTCTTGTTGAG GTCACATATGGTGCAAGTTTTATTGAATACTTTGCTGAAGAAGCAAAGCGTEST: gi|7404226|gb|AU062684.2|AU062684
genomic: TTCTCATGACACTGGAGCAAGGGAAACCTATGAAAGAGGCTCTTGTTGAGgtactttcta ... aaatattcagGTCACATATGGTGCAAGTTTTATTGAATACTTTGCTGAAGAAGCAAAGCGT
EST: TTCTCATGACACTGGAGCAAGGGAAACCTATGAAAGAGGCTCTTGTTGAG GTCACATATGGTGCAAGTTTTATTGAATACTTTGCTGAAGAAGCAAAGCGNEST: gi|33794852|gb|CF323305.1|CF323305
genomic: TTCTCATGACACTGGAGCAAGGGAAACCTATGAAAGAGGCTCTTGTTGAGgtactttcta ... aaatattcagGTCACATATGGTGCAAGTTTTATTGAATACTTTGCTGAAGAAGCAAAGCGT
EST: TTCTCATGACACTGGAGCAAGGGAAACCTATGAAAGAGGCTCTTGTTGAG GTCACATATGGTGCAAGTTTTATTGAATACTTTGCTGAAGAAGCAAAGCGTEST: gi|218490997|gb|FG945735.1|FG945735
genomic: TTCTCATGACACTGGAGCAAGGGAAACCTATGAAAGAGGCTCTTGTTGAGgtactttcta ... aaatattcagGTCACATATGGTGCAAGTTTTATTGAATACTTTGCTGAAGAAGCAAAGCGT
EST: TTCTCATGACACTGGAGCAAGGGAAACCTATGAAAGAGGCTCTTGTTGAG GTCACATATGGTGCAAGTTTTATTGAATACTTTGCTGAAGAAGCAAAGCGTEST: gi|218488132|gb|FG951352.1|FG951352
genomic: TTCTCATGACACTGGAGCAAGGGAAACCTATGAAAGAGGCTCTTGTTGAGgtactttcta ... aaatattcagGTCACATATGGTGCAAGTTTTATTGAATACTTTGCTGAAGAAGCAAAGCGT
EST: TTCTCATGACACTGGAGCAAGGGAAACCTATGAAAGAGGCTCTTGTTGAG GTCACATATGGTGCAAGTTTTATTGAATACTTTGCTGAAGAAGCAAAGCGT
genomic: TTCTCATGACACTGGAGCAAGGGAAACCTATGAAAGAGGCTCTTGTTGAGgtactttcta ... aaatattcagGTCACATATGGTGCAAGTTTTATTGAATACTTTGCTGAAGAAGCAAAGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGATTTAATTATCTCACACAAGGAAGAACTTGCACTTCTCATGACACTGGAGCAAGGGAAACCTATGAAAGAGGCTCTTGTTGAGgtactttctaaaatactgcgctgatattcgttagttggaatatgtgattctaaagccttactggagactcattggttgctataaatattcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG