Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGACAGCATTTATAATTCAAGCGTTTTGTGCTACTGATCTTGTAAATGAGTATGCTTCTACTGTTCAGAGAGCCCATGAGTTCTTGAAAAATTCACAGgtacagaatctctagtttaataatctaaatcataaattaactactttataagataatccagcatatattgcatattctttcttgaag

Basic information

species Oryza sativa
transcript LOC_Os02g04750.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g04750.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G006937_T01 (Zea mays), 5'ss of exon 9
GGAGACAGCATTTATAATTCAAGCGTTTTGTGCTACTGATCTTGTAAATGAGTATGCTTCTACTGTTCAGAGAGCCCATGAGTTCTTGAAAAATTCACAGgtacagaatctctagtttaataatcta--aatcataaattaactact-ttataa-gataatccagcatatattgcatattctttcttgaag
||||||| |||| ||||||||||| ||||| ||||| |||||||| ||||| |||| ||| ||| ||||||||||| |||||||  ||||||||||||||||      ||| ||  || | |   |   |||  | |  ||  |||  | ||    || ||  | || |   ||||| |   | |||||||
GGAGACATCATTCATAATTCAAGCATTTTGCGCTACAGATCTTGTTAATGACTATGGTTCAACTCTTCAGAGAGCCTATGAGTTTATGAAAAATTCACAGgtttctt-tctttatcttgaaatcgtggcaatttttatatatttaccgtcatggcaatgatgaaacacaacatgcatttgtgtacttgaag

upper sequence: LOC_Os02g04750.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G468929_T01 (Zea mays), 5'ss of exon 9
GGAGACAGCATTTATAATTCAAGCGTTTTGTGCTACTGATCTTGTAAATGAGTATGCTTCTACTGTTCAGAGAGCCCATGAGTTCTTGAAAAATTCACAGgtacagaatctctagttt--aataatctaaat-cataaat-taactactttataagataatccagcatatattgcatattctttcttgaag-----
||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||| | | ||| |||||||||||||||||||  | ||| |||| |||||     || | ||   |  ||||||||||||  |||||  |||| | || | |   ||| | |   | || |  |||| |||  ||| |      
GGAGACAGCTTTTATAATTCAAGCATTTTGTGCTACAGATCTTGTCAATGAGTATGGTCCAACTATTCAGAGAGCCCATGAGTTTATAAAACATTCGCAGgtttcttatttttatgctcaaataatctaaatatataaaaataaccatttcacatagtaaactaatgt-tacttgatatgcttatttggatccaag