1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCATCTCAAAATCTTCGACTGAAATAGATTCTGACTTGAACTTGCTTCGCCCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGgtaggtgttgttctttgctgcaaatgaaatccaaaaagttatttccaagtagagcatgttttgtctgtagtaatcatatttatgttacacataataagaa...
species | Oryza sativa |
transcript | LOC_Os02g04260.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAG GAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTCEST: gi|116875618|gb|EC366126.1|EC366126
genomic: CCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGgtaggtgttg ... tgttcttcagGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTC
EST: CCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAG GAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTCEST: gi|86501520|gb|CI144153.1|CI144153
genomic: CCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGgtaggtgttg ... tgttcttcagGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTC
EST: CCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAG GAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTCEST: gi|89174615|gb|CI110813.1|CI110813
genomic: CCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGgtaggtgttg ... tgttcttcagGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTC
EST: CCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAG GAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTCEST: gi|29661826|gb|CB658101.1|CB658101
genomic: CCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGgtaggtgttg ... tgttcttcagGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTC
EST: CCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAG GAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTCEST: gi|86541090|gb|CI181296.1|CI181296
genomic: CCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGgtaggtgttg ... tgttcttcagGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTC
EST: GGATGATGTTAG GAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTCEST: gi|88246086|gb|CI245935.1|CI245935
genomic: GGATGATGTTAGgtaggtgttg ... tgttcttcagGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTC
EST: CCAGAGTTATACTATGAAAGCAGGAAATACATTGGATGATGTTAG GAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTCEST: gi|4880964|gb|AU065263.1|AU065263
genomic: CCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGgtaggtgttg ... tgttcttcagGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTC
EST: CCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAG GAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGANGTTACACGCTEST: gi|116874985|gb|EC365493.1|EC365493
genomic: CCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGgtaggtgttg ... tgttcttcagGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGA-GTTACACGCT
EST: CCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAG GAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTCEST: gi|27920549|gb|CB096357.1|CB096357
genomic: CCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGgtaggtgttg ... tgttcttcagGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTC
EST: CCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAG GAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTC
genomic: CCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGgtaggtgttg ... tgttcttcagGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGAGTTACACGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATCTCAAAATCTTCGACTGAAATAGATTCTGACTTGAACTTGCTTCGCCCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGgtaggtgttgttctttgctgcaaatgaaatccaaaaagttatttccaagtagagcatgttttgtctgtagtaatcatatttatgttacacataataagaa
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