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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTATGTGGCAACAAGGTGGTACCGAGCTCCTGAATTATGTGGTTCTTTTTTCTCCAAAgtaagctggtcattctgtaacacattgtgcattcctgaaatgtgcaagtccttcagatttgtatataattttttcttaaaaagttgcaaattctccaaat...

Basic information

species Oryza sativa
transcript LOC_Os02g04230.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g04230.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G374088_T01 (Zea mays), 5'ss of exon 4
GATTATGTGGCAACAAGGTGGTACCGAGCTCCTGAATTATGTGGTTCTTTTTTCTCCAAAgtaagctggtcatt---ctgtaacacattgtgcattcctgaaatgtgcaagtccttcagatttgt-atataattttttcttaaaaagttgcaaattctccaaat
|||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||  ||||||||| | ||    | |          | |||| |   |||  ||| |   |   ||   | || || ||     || |  | || ||  |  | ||   
GATTATGTCGCAACAAGGTGGTACCGGGCTCCTGAATTATGTGGCTCCTTTTTCTCCAGTgtaagctggcctttagcttctggtcttactggaattcttatgatggacaaatatgtggcatggatcatgtagttagacttttacca-ttacag-tgatacac--

upper sequence: LOC_Os02g04230.2 (Oryza sativa), 5'ss of exon 4
lower sequence: PP1S87_157V6.2 (Physcomitrella patens), 5'ss of exon 4
GATTATGTGGCAACAAGGTGGTACCGAGCTCCTGAATTATGTGGTTCTTTTTTCTCCAAAgtaagctggtcattctgtaacacattgtgcattcctgaaatgtg---caagtccttcag----atttgtatataattttttcttaaaaagt--tgcaaattctccaaat-------
||||||||||| ||||||||||| |||||||| ||  |||||||||| || || || || ||||          || |    || || |   || || |   ||   |||||  ||  |    |  | | | | | |  || | || ||||  ||  |  || |    |       
GATTATGTGGCCACAAGGTGGTATCGAGCTCCGGAGCTATGTGGTTCATTCTTTTCTAAGgtaacactagtgcgctctcgttcagtg-gaggtcgtggaccatgacacaagttattgggtagaacatatttgtgagtgattttgaataagtgttgttatgtcccttttttttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58655691|gb|CK044371.1|CK044371
EST:     CAACAAGGTGGTACCGAGCTCCTGAATTATGTGGTTCTTTTTTCTCCAAA                         TACACCCCTGCAATTGATATTTGGAGTATAGGGTGCATTTTTGCTGAAATT
genomic: CAACAAGGTGGTACCGAGCTCCTGAATTATGTGGTTCTTTTTTCTCCAAAgtaagctggt ... gtttgtacagTACACCCCTGCAATTGATATTTGGAGTATAGGGTGCATTTTTGCTGAAATT
EST: gi|33677513|gb|CF305752.1|CF305752
EST:     CAACAAGGTGGTACCGAGCTCCTGAATTATGTGGTTCTTTTTTCTCCAAA                         TACACCCCTGCAATTGATATTTGGAGTATAGGGTGCATTTTTGCTGAAATT
genomic: CAACAAGGTGGTACCGAGCTCCTGAATTATGTGGTTCTTTTTTCTCCAAAgtaagctggt ... gtttgtacagTACACCCCTGCAATTGATATTTGGAGTATAGGGTGCATTTTTGCTGAAATT