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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTGCCGGATGTTCATCATCAACGCCGGTCAAGGATTCAGGCTTCTCTGGAACACCGTCAAGTCCTTCCTCGATCCCAAGACCACAGCCAAGATCCATgtaatccaatccatccacaatcttttcgatgtcaatgtcacatcgatcattcgtaattaagctacatttgatcaatttgcaactaaacattacataatgtttgcatttatgtgccctgttttaaccag

Basic information

species Oryza sativa
transcript LOC_Os02g04030.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g04030.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G171349_T02 (Zea mays), 5'ss of exon 4
TCTGTGCCGGATGTTCATCATCAACGCCGGTCAAGGATTCAGGCTTCTCTGGAACACCGTCAAGTCCTTCCTCGATCCCAAGACCACAGCCAAGATCCATgtaatccaatccatccacaatcttttcgatgtcaatgtcacatcgatcattcgtaattaagcta-catttgatcaatttgcaactaaacattacataatgtttgcatttatgtgccctgttttaaccag
 |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||| | || | ||      ||         |||  |   ||| | |   |   | | |    | ||| || ||   |     || |         |                                
GCTGTGCCGGATGTTCATCATCAACGCGGGGCAAGGGTTCAGGCTTCTCTGGAACACCGTCAAGTCGTTCCTGGACCCCAAGACCACGGCCAAGATCCATgtaaccaaaccgatttctcctccccctcccatcacag--gcattggttggttccactcacttgatcatctgctctgctctgctctgatggcggtgcag-------------------------------

upper sequence: LOC_Os02g04030.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA06G01270.1 (Glycine max), 5'ss of exon 6
TCTGTGCCGGATGTTCATCATCAACGCCGGTCAAGGATTCAGGCTTCTCTGGAACACCGTCAAGTCCTTCCTCGATCCCAAGACCACAGCCAAGATCCATgtaatccaatccatccacaatcttttcgatgtcaatgtcacatcgatcattcgtaattaagctacatttgatcaatttgcaactaaacattacataatgtttgcatttatgtgccctgttttaaccag
 |||  ||| |||||||||||||| || |||   ||||| |||||  | ||||||||| | ||||| ||||| ||||||||||||||  | || |||||||||| |      ||    | |||  |     ||||| |   | | ||         || |  | ||||| | ||    |  ||| |||||    ||||| ||  ||| |   |               
ACTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAACACCATTAAGTCATTCCTAGATCCCAAGACCACCTCAAAAATCCATgtaaac------atttttagtctgctga---tcaat-ttgaaccaat--------gttgattttcatttaagcagg--gacactgaacatgt--taatgatt-tattgaccag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66932181|gb|CX119029.1|CX119029
EST:     GGAACACCGTCAAGTCCTTCCTCGATCCCAAGACCACAGCCAAGATCCAT                         GTCCTAGGCAACAAGTACCAGAGCAAGCTGCTGGAAGTGATTGATCCCAG
genomic: GGAACACCGTCAAGTCCTTCCTCGATCCCAAGACCACAGCCAAGATCCATgtaatccaat ... ttttaaccagGTCCTAGGCAACAAGTACCAGAGCAAGCTGCTGGAAGTGATTGATCCCAG