Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACCAAAATGAAGAGTTTGCCGTGAGAGGAAAGGAGCCGAAAGATGAAGTGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttctaatattgtgctttcttgtcctctttggggaaaatgaaattttacctagttttatactacttaacaaactagaaatcaacaaaatttgactagtctgatgatgataagtggggtttggcactacgtttgactaaatgttgtttttagatggagatctgatcagcacagttttggttatgtttcag

Basic information

species Oryza sativa
transcript LOC_Os02g02960.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02960.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G064988_T03 (Zea mays), 5'ss of exon 3
TCACCAAAATGAAGAGTTTGCCGTGAGAGGAAAGGAGCCGAAAGATGAAGTGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatt--tttcta-atattgtgctttcttgt-cctctttggggaaaatgaaattttaccta-gttttatactacttaacaaactagaaatcaacaaaatttgactagtctga-tgatgataagtggggtttggcactacgtttgactaaatgttgtttttagatggagatctgatcagcacagttttggttatgttt-cag
 |||||||||||||||||||| |||||||| ||||| || || |||||||| ||||| ||||| ||||||||||| || ||||| ||||||||||||||||||  |  |||||| | | |   |||  |||| || |||   ||||||   |  | ||  ||    ||     || ||     |   | |  |||| |         || |||   ||    | || |   ||   || | | | | |||       |||       | |||| ||||     ||| || |||| ||| |||
CCACCAAAATGAAGAGTTTGCAGTGAGAGGGAAGGAACCAAAGGATGAAGTTCAGATTTACACATGGAAGGATGCGACCCTCCGCGAGCTCACTGATCTTgtatgtcctttctacagacttaacttgtttgtgccacttcaaggaaaaaatatgtctatttacaccttgaggaacgtagggtgccttataataacata--ccactgggtttgagcaatagctattgagtcctgagcctgcatgtcaataa----cacttt-------aaatcttatca-----gttatgattattttttcag

upper sequence: LOC_Os02g02960.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G060669_T01 (Zea mays), 5'ss of exon 4
TCACCAAAATGAAGAGTTTGCCGTGAGAGGAAAGGAGCCGAAAGATGAAGTGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttctaat---attgtgctttcttgt-cctctttggggaaaatgaaattttacctagttttatactacttaacaaactagaaatcaacaaaatttgactagtctgatgatgataagtggggtttggcactacgtttgactaaatgttgtttttagatggagatctgatcagcacagttttggttatgtttcag
 |||||||||||||||||| | |||||||| || || || || |||||||| ||||| ||||| |||||||||||||| ||||| ||||| ||||||||||||| |  | || |   | |   ||| || |  || ||||  ||||||  ||    |   ||  |||||||  ||| |  ||         |  |   ||| |   |||| || ||   |         |  ||||  ||||||  |    |     | | |     |||| |||||  ||  |      || ||||||
CCACCAAAATGAAGAGTTTTCTGTGAGAGGGAAAGAACCAAAGGATGAAGTTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTTgtaagtcctttattcagacttaacttgctcgggccactttaaggaaaa--aagagatgttta--tttatac--cttgaggaa---------agtagggtttcat--gtcttataatagca---------taccactgggtttgagcatgcatgtcaataacacatcaatcttatcagtgcatatgattgaatttttcag

upper sequence: LOC_Os02g02960.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA03G02240.1 (Glycine max), 5'ss of exon 2
TCACCAAAATGAAGAGTTTGCCGTGAGAGGAAAGGAGCCGAAAGATGAAGTGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttctaatattgtgctttcttgtcctctttggggaaaatgaaattttacctagttttatactacttaacaaactagaaatcaacaaaatttgactagtctgatgatgataagtggggtttggcactacgtttgactaaatgttgtttttagatggagatctgatcagcacagttttggttatgtttcag
 ||    |  ||||| |||||||| ||||| || ||||| ||||| || || ||||| ||||| |||||||| || || |||||||| ||||| ||||||||||||| || ||| |       | ||    ||||        |    |||||      |  | || | |     |  ||     |  ||  |  |      || |   || |                                                                                  
CCATTCCATGGAAGACTTTGCCGTCAGAGGCAAAGAGCCCAAAGACGAGGTTCAGATTTACACCTGGAAGGACGCTACTCTCCGAGAACTCACCGATCTTgtaatttctc-aatttgacctaatgtttcgttcttc-------actccatttttttccttcctttattgccctttatgcttatggttcactca-ctcactgtgttttgcgaag----------------------------------------------------------------------------------

upper sequence: LOC_Os02g02960.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA20G32760.1 (Glycine max), 5'ss of exon 2
TCACCAAAATGAAGAGTTTGCCGTGAGAGGAAAGGAGCCGAAAGATGAAGTGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttctaatattgtgctttcttgtcctctttggggaaaatgaaattttacctagttttatactacttaacaaactagaaatcaacaaaatttgactagtctgatgatgataagtggggtttggcactacgtttgactaaatgttgtttttagatggagatctgatcagcacagttttggttatgtttcag
 ||    |  ||||| |||| ||| ||||| || ||| | |||||||| || ||||| ||||| |||||||| || || |||||||| |||||  |||||||||||| || ||| |||  ||    |||| ||  |            |||||   |  |  | || | | |   |  ||     |   |  | |  |  |  | ||   |                                                                                    
CCATTCCATGGAAGACTTTGTCGTCAGAGGCAAAGAGTCCAAAGATGAGGTTCAGATTTACACCTGGAAGGACGCTACTCTCCGAGAACTCACCAATCTTgtaatttctc-aat-ttgacctaatgtgtcttcactc----------cattttttttcttcctttattgccttttatgcttatggttggctcactcagtgtgttttgcaaag-----------------------------------------------------------------------------------

upper sequence: LOC_Os02g02960.3 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv15s0048g01290.t01 (Vitis vinifera), 5'ss of exon 3
TCACCAAAATGAAGAGTTTGCCGTGAGAGGAAAGGAGCCGAAAGATGAAGTGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttctaatattgtgctttcttgtcctctttggggaaaatgaaattttacctagttttatactacttaacaaactagaaatcaacaaaatttgactagtctgatgatgataagtggggtttggcactacgtttgactaaatgttgtttttagatggagatctgatcagcacagttttggttatgtttcag
||||   || ||||| ||||| |||||||| |||||||| || ||||| || || || ||||| ||||||||||| || || || ||| | |||||||| |||  |       | ||| |||  ||  ||    | | | |   | |  ||||   | |  | || |    |    ||  | ||       |    | |||| |||                                                                                         
TCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCAAGGATGAGGTCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagctactttttgagctgactgatc----tagtgtattgttactttttgagttgactgatccagtatgttgaa--acaatgtgtttattccttactactct-----------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10930921|gb|AU161195.1|AU161195
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|38469768|gb|CF953899.1|CF953899
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|58587706|gb|CF986014.1|CF986014
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|58603994|gb|CK014522.1|CK014522
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|11565040|gb|AU165676.1|AU165676
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|29659833|gb|CB656108.1|CB656108
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|88760807|gb|CI770363.1|CI770363
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|33660656|gb|CF291623.1|CF291623
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|5667413|gb|AU077655.1|AU077655
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCCCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCCAAGAAANAGAAATGCAAGGCTTTCTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAG-CAAGAAAAAGAAATGCAAGGCTTTCTTT
EST: gi|88399521|gb|CI606142.1|CI606142
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|58664968|gb|CK053654.1|CK053654
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|88329643|gb|CI650106.1|CI650106
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|33659745|gb|CF282358.1|CF282358
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|88725672|gb|CI748931.1|CI748931
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAAT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAAT
EST: gi|86841950|gb|CI338359.1|CI338359
EST:     GGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: GGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|23514260|gb|BU673547.1|BU673547
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|11610498|gb|AU166174.1|AU166174
EST:     ACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: ACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|88694523|gb|CI738561.1|CI738561
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|58590816|gb|CF989124.1|CF989124
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTGGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|11610501|gb|AU166177.1|AU166177
EST:     GAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: GAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|88266376|gb|CI377278.1|CI377278
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|33659744|gb|CF282357.1|CF282357
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|27576068|gb|CA998762.1|CA998762
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|88352110|gb|CI613761.1|CI613761
EST:     TGCAGATATAAACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGAAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|88960218|gb|CI382096.1|CI382096
EST:     GATGCCACACTCCGAGAGCTCACTTATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: GATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|33660655|gb|CF291622.1|CF291622
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|33657429|gb|CF280043.1|CF280043
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|33806035|gb|CF328897.1|CF328897
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|33658759|gb|CF281372.1|CF281372
EST:     GCAGATATACACCGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: GCAGATATACAC-GTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|88348144|gb|CI637605.1|CI637605
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|38468952|gb|CF953083.1|CF953083
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTC
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTC
EST: gi|33657430|gb|CF280044.1|CF280044
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGC
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGC
EST: gi|33653966|gb|CF276580.1|CF276580
EST:     GCAGATATACACGNTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: GCAGATATACACG-TGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|55438399|gb|CV732495.1|CV732495
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|5667412|gb|AU077654.1|AU077654
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|8857631|gb|AU094949.1|AU094949
EST:     TGCAGATATACACGTGGANGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATNCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCACCAAAATGAAGAGTTTGCCGTGAGAGGAAAGGAGCCGAAAGATGAAGTGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttctaatattgtgctttcttgtcctctttggggaaaatgaaattttacctagttttatactacttaacaaactagaaatcaacaaaatttgactagtctgatgatgataagtggggtttggcactacgtttgactaaatgttgtttttagatggagatctgatcagcacagttttggttatgtttcag

- - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA