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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATCAAGGTCATTCCAGAACCATAGTTGGGATCCAAAAGCAAAATGGTCAACATGGGAATCAAGATCGATTTACCCTTTTGATTTTGGACCCTGGCCATgtaagctgtcgctactattcatttttttaaaagaaaaaggaaaaagaaagttgttattattcactttgtagtatatcattaatttttgttcaattgtgcatattttttattattcaatcttctgtaaacatccagaaaatttgttctacatttctctgccaaattaagatataaactttgctctaacggtttacag

Basic information

species Oryza sativa
transcript LOC_Os02g01710.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86497902|gb|CI140535.1|CI140535
EST:     AACATGGGAATCAAGATCGATTTACCCTTTTGATTTTGGACCCTGGCCAT                         AGAACGTCAGATTTGGAGAGGGCTCTTCGAAGCAAGACAGGATGGCAGCGT
genomic: AACATGGGAATCAAGATCGATTTACCCTTTTGATTTTGGACCCTGGCCATgtaagctgtc ... cggtttacagAGAACGTCAGATTTGGAGAGGGCTCTTCGAAGCAAGACAGGATGGCAGCGT
EST: gi|86498521|gb|CI141154.1|CI141154
EST:     AACATGGGAATCAAGATCGATTTACCCTTTTGATTTTGGACCCTGGCCAT                         AGAACGTCAGATTTGGAGAGGGCTCTTCGAAGCAAGACAGGATGGCAGCGT
genomic: AACATGGGAATCAAGATCGATTTACCCTTTTGATTTTGGACCCTGGCCATgtaagctgtc ... cggtttacagAGAACGTCAGATTTGGAGAGGGCTCTTCGAAGCAAGACAGGATGGCAGCGT