1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATGgttagttcagttggtaccttactagctaggactattattattatagtaggagtaattatttgttcaatttcgcaattgcaccacaaaattactcatgtaaacatttccttttaccacag
species | Oryza sativa |
transcript | LOC_Os02g01150.4 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGGAGTCATCGGAGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATG ATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACGEST: gi|58693460|gb|CK082147.1|CK082147
genomic: TGGGAGTCATCGGAGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATGgttagttcag ... tttaccacagATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACG
EST: TGGGAGTCATCGGAGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATG ATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACGEST: gi|10794734|gb|AU108700.1|AU108700
genomic: TGGGAGTCATCGGAGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATGgttagttcag ... tttaccacagATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACG
EST: TGGGAGTCATCGGAGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATG ATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACGEST: gi|11442863|gb|BF430762.1|BF430762
genomic: TGGGAGTCATCGGAGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATGgttagttcag ... tttaccacagATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACG
EST: GGGAGTCATCGGAGCTGGTCGACATCGGCTCAGCTTACGCAAGAATGATG ATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACGEST: gi|38481826|gb|CF965897.1|CF965897
genomic: GGGAGTCATCGGAGCTGGTCGA-ATCGGCTCAGCTTACGCAAGAATGATGgttagttcag ... tttaccacagATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACG
EST: AGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATG ATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACG
genomic: AGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATGgttagttcag ... tttaccacagATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATGgttagttcagttggtaccttactagctaggactattattattatagtaggagtaattatttgttcaatttcgcaattgcaccacaaaattactcatgtaaacatttccttttaccacag
- - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA