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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAGCTGGCCGCGTCTCTGTCGCTGGCGGCGGCGCGGAGGATCGTGGAGGCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctctctctctctctctctttacttttactactgctgctagttgatagatactcatatatgtatatatgtatatatgtgcatgcag

Basic information

species Oryza sativa
transcript LOC_Os02g01150.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38477990|gb|CF962123.1|CF962123
EST:     GGCTCCCGCACCT                         GTTCGTGGGGAACTTGCTCAAGGTGTCAGACTGTGGGAGTCATCGGAGCTG
genomic: GGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGG-GTCAGACTGTGGGAGTCATCGGAGCTG
EST: gi|58691582|gb|CK080269.1|CK080269
EST:     GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT                         GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
EST: gi|29674134|gb|CB670409.1|CB670409
EST:     GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT                         GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
EST: gi|29680605|gb|CB676880.1|CB676880
EST:     GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT                         GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
EST: gi|29616322|gb|CB621334.1|CB621334
EST:     GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT                         GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
EST: gi|10794734|gb|AU108700.1|AU108700
EST:     GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT                         GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
EST: gi|29682953|gb|CB679228.1|CB679228
EST:     GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT                         GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCCGAGCTGG
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
EST: gi|29682997|gb|CB679272.1|CB679272
EST:     GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT                         GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
EST: gi|29655664|gb|CB651939.1|CB651939
EST:     GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT                         GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
EST: gi|11442863|gb|BF430762.1|BF430762
EST:     CAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT                         GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
genomic: CAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
EST: gi|29621567|gb|CB626578.1|CB626578
EST:     GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT                         GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
EST: gi|58606736|gb|CK034769.1|CK034769
EST:     GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT                         GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
EST: gi|29660668|gb|CB656943.1|CB656943
EST:     GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT                         GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
EST: gi|29678225|gb|CB674500.1|CB674500
EST:     GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT                         GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
EST: gi|88388887|gb|CI592775.1|CI592775
EST:     GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT                         GTTAGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGG
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGG
EST: gi|29613448|gb|CB618461.1|CB618461
EST:     GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT                         GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
EST: gi|29676108|gb|CB672383.1|CB672383
EST:     GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT                         GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGAGCTGGCCGCGTCTCTGTCGCTGGCGGCGGCGCGGAGGATCGTGGAGGCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctctctctctctctctctttacttttactactgctgctagttgatagatactcatatatgtatatatgtatatatgtgcatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA