1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAAAGGGATGAAGGGGGCTGTAGATAAGGCTACAGAGATTTTAAATAAGACACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatatagaactagccacatgtctgtctagatttgtactgtgcccaatgtttgtctttcttcattttcaagcag
species | Oryza sativa |
transcript | LOC_Os01g74650.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGCAGEST: gi|701729|gb|D48020.1|D48020
genomic: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCC-AA--AGgtaacatata ... tttcaagc
EST: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|29655936|gb|CB652211.1|CB652211
genomic: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|55410639|gb|CV723015.1|CV723015
genomic: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|29616466|gb|CB621478.1|CB621478
genomic: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|28298176|gb|CB238406.1|CB238406
genomic: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|29663371|gb|CB659646.1|CB659646
genomic: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|29687246|gb|CB683521.1|CB683521
genomic: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|163927355|gb|EG710663.1|EG710663
genomic: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGCAGEST: gi|33801701|gb|CF326722.1|CF326722
genomic: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCC-AA--AGgtaacatata ... tttcaagc
EST: TGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|38480498|gb|CF964587.1|CF964587
genomic: TGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|29655935|gb|CB652210.1|CB652210
genomic: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: CACCTGATGCCTATATGGTGCAGCAGTTTGACAACCCTGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTTTAAAGGGAAGEST: gi|29672976|gb|CB669251.1|CB669251
genomic: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: GATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|29677863|gb|CB674138.1|CB674138
genomic: GATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|87008043|gb|CI297021.1|CI297021
genomic: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|58690422|gb|CK079109.1|CK079109
genomic: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: GCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|29616196|gb|CB621208.1|CB621208
genomic: GCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|29644300|gb|CB649307.1|CB649307
genomic: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: TGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|29684900|gb|CB681175.1|CB681175
genomic: TGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: TGCAGCAGTTTGACAACCCTGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|38478600|gb|CF962733.1|CF962733
genomic: TGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAGEST: gi|38481934|gb|CF965999.1|CF965999
genomic: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
EST: CACCTGATGCCTATATGCTGGAGCAGTTTGACAACCCTGCCAACCCAAAG GTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
genomic: CACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatata ... tttcaagcagGTACATTATGAGACTACTGGGCCAGAAATCTGGGAGGATTCTAAAGGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGGGATGAAGGGGGCTGTAGATAAGGCTACAGAGATTTTAAATAAGACACCTGATGCCTATATGCTGCAGCAGTTTGACAACCCTGCCAACCCAAAGgtaacatatagaactagccacatgtctgtctagatttgtactgtgcccaatgtttgtctttcttcattttcaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG