1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTGCTATTGTTGTTGGTGGCGGCAATATCTTCCGCGGGGCCTCTTGGGCTGGATGTAGTGGACTCGACCGCTCATCAGCAGATTACATTGGgtatgatgttcagttttctaatgtctttcataattgaaccatcgtaacatcctgtggttggcaatcgagaatgcattaaatgaagtggaagcgccatgag...
species | Oryza sativa |
transcript | LOC_Os01g73450.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAGCAGATTACATTGG CATGTGGGCTACTGTGATGAATGCCATATTTCTTCAAGCAACAATGGAGAGEST: gi|29686224|gb|CB682499.1|CB682499
genomic: CAGCAGATTACATTGGgtatgatgtt ... cctaattcagCATGTTGGCTACTGTGATGAATGCCATATTTCTTCAAGCAACAATGGAGAG
EST: TCTTGGGCTGGATGTAGTGGACTCGACCGCTCATCAGCAGATTACATTGG CATGTTGGCTACTGTGATGAATGCCATATTTCTTCAAGCAACAATGGAGAGEST: gi|27547309|gb|CA765514.2|CA765514
genomic: TCTTGGGCTGGATGTAGTGGACTCGACCGCTCATCAGCAGATTACATTGGgtatgatgtt ... cctaattcagCATGTTGGCTACTGTGATGAATGCCATATTTCTTCAAGCAACAATGGAGAG
EST: TCTTGGGCTGGATGTAGTGGACTCGACCGCTCATCAGCAGATTACATTGG CATGTTGGCTACTGTGATGAATGCCATATTTCTTCAAGCAACAATGGAGAGEST: gi|29641572|gb|CB646579.1|CB646579
genomic: TCTTGGGCTGGATGTAGTGGACTCGACCGCTCATCAGCAGATTACATTGGgtatgatgtt ... cctaattcagCATGTTGGCTACTGTGATGAATGCCATATTTCTTCAAGCAACAATGGAGAG
EST: TCTTGGGCTGGATGTAGTGGACTCGACCGCTCATCAGCAGATTACATTGG CATGTTGGCTACTGTGATGAATGCCATATTTCTTCAAGCAACAATGGAGAGEST: gi|29663412|gb|CB659687.1|CB659687
genomic: TCTTGGGCTGGATGTAGTGGACTCGACCGCTCATCAGCAGATTACATTGGgtatgatgtt ... cctaattcagCATGTTGGCTACTGTGATGAATGCCATATTTCTTCAAGCAACAATGGAGAG
EST: TCAGCAGATTACATTGG CATGTTGGCTACTGTGATGAATGCCATATTTCTTCAAGCAACAATGGAGAGEST: gi|218484425|gb|FG955570.1|FG955570
genomic: TCAGCAGATTACATTGGgtatgatgtt ... cctaattcagCATGTTGGCTACTGTGATGAATGCCATATTTCTTCAAGCAACAATGGAGAG
EST: TCTTGGGCTGGATGTAGTGGACTCGACCGCTCATCAGCAGATTACATTGG CATGTTGGCTACTGTGATGAATGCCATATTTCTTCAAGCAACAATGGAGAG
genomic: TCTTGGGCTGGATGTAGTGGACTCGACCGCTCATCAGCAGATTACATTGGgtatgatgtt ... cctaattcagCATGTTGGCTACTGTGATGAATGCCATATTTCTTCAAGCAACAATGGAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCTATTGTTGTTGGTGGCGGCAATATCTTCCGCGGGGCCTCTTGGGCTGGATGTAGTGGACTCGACCGCTCATCAGCAGATTACATTGGgtatgatgttcagttttctaatgtctttcataattgaaccatcgtaacatcctgtggttggcaatcgagaatgcattaaatgaagtggaagcgccatgag
- - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT