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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAAGGACAGAAGGACATTGCCCAAGAGGGCTTCAATGTTGGGTTTGGGCAATCTGTGCATGTTGGCTATAAGTGGGGACTTGTTCGTGGGATTACCAGgtaaaaaaggatatgtcattccaagtgtagttcttgtacacagcttcttgtagcattctaattaatttggttttctgtttattgtccttaaaacag

Basic information

species Oryza sativa
transcript LOC_Os01g72200.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g72200.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G101053_T03 (Zea mays), 5'ss of exon 4
CTGAAGGACAGAAGGACATTGCCCAAGAGGGCTTCAATGTTGGGTTTGGGCAATCTGTGCATGTTGGCTATAAGTGGGGACTTGTTCGTGGGATTACCAGgtaaaaaaggatatgtcattccaagtgtagtt--cttgtaca--cagcttcttgtagcattctaattaattt-ggttttctgtttattgtcctta-aaacag
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CAGAAGGGCAGAAGGACTCTGCCCAGGAAGGCTTCAATGTTGGGTTCAGGCAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAGgtgcatttcc-tctatccttccaataatagatgtcttgtattatcattctattctagtgtttccttggattttaattttccatctgtcatcttttcaagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88306128|gb|CI636506.1|CI636506
EST:     CAATCTGTGCATGTTGGCTATAAGTGGGGACTTGTTCGTGGGATTACCAG                         TGCATTAGCTAGTCTCCCAGACAACTTGAAGGAAAAGATGTTCCCCAATGT
genomic: CAATCTGTGCATGTTGGCTATAAGTGGGGACTTGTTCGTGGGATTACCAGgtaaaaaagg ... cttaaaacagTGCATTAGCTAGTCTCCCAGACAACTTGAAGGAAAAGATGTTCCCCAATGT