1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAGAAAACCCTGTGTTGGCTCTATCAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGgtttgtttcatctgaacatttcttgacatgtatacagaatttcttatcccctgaatcccttcagataacttagatacacaggtcaaaattcagaagacacttactttttatttgttagagaacatatatcattggttgtcattttacag
species | Oryza sativa |
transcript | LOC_Os01g71420.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAG GCAATTTTCGTTGGTCACAACCACGG-CTGGATTGGTGCTGCCCACACGAGEST: gi|86494914|gb|CI137547.1|CI137547
genomic: AAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGgtttgtttca ... cattttacagGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAG
EST: AAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAG GCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGEST: gi|58599382|gb|CK009910.1|CK009910
genomic: AAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGgtttgtttca ... cattttacagGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAG
EST: AAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAG GCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGEST: gi|88994031|gb|CI114321.1|CI114321
genomic: AAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGgtttgtttca ... cattttacagGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAG
EST: AAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAG GCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGEST: gi|15851504|gb|BI799780.1|BI799780
genomic: AAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGgtttgtttca ... cattttacagGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAG
EST: AAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAG GCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGEST: gi|86603554|gb|CI112314.1|CI112314
genomic: AAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGgtttgtttca ... cattttacagGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAG
EST: TGCCCTTGTCAAGAGGGCTTCAGTGAAG GCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGEST: gi|88462922|gb|CI519834.1|CI519834
genomic: TGCCCTTGTCAAGAGGGCTTCAGTGAAGgtttgtttca ... cattttacagGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAG
EST: AANCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAG GCAATTTTCGTTGGTCACAACCACGGCCTG-AGTTGGTGCTGCCCACACGA
genomic: AAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGgtttgtttca ... cattttacagGCAATTTTCGTTGGTCACAACCACGGCCTGGA-TTGGTGCTGCCCACACGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAAAACCCTGTGTTGGCTCTATCAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGgtttgtttcatctgaacatttcttgacatgtatacagaatttcttatcccctgaatcccttcagataacttagatacacaggtcaaaattcagaagacacttactttttatttgttagagaacatatatcattggttgtcattttacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG