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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAAAATGTAACGGACACCGAATTGACTGATTTATTTTCCAAATATGGAAATATCAAGGATTTACAGATTTTAAGGGGTTCACAACAAACAAGTAAAGgtgagatctggtgaataacctattttcctaaccatttagagctagaagcactggttgactctggaactttacaatacctaatgtttttgttaaattaactgtgttattgcag

Basic information

species Oryza sativa
transcript LOC_Os01g71200.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g71200.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G005459_T01 (Zea mays), 5'ss of exon 4
CCAAAAAATGTAACGGACACCGAATTGACTGATTTATTTTCCAAATATGGAAATATCAAGGATTTACAGATTTTAAGGGGTTCACAACAAACAAGTAAAGgtgagatctggtgaataacctattttcctaaccatttagagctagaagcactggttgactctggaactttacaatacctaatgtttttgttaaattaactgtgttattgcag
|| |||||||| || ||||| || ||||||||||| |||||||||||||| ||| ||| |||||| || ||||| || ||||||||||||||||  |||||| | |||  |  || ||  |  |||||| |  | |  ||   | ||||| ||  | |       | | |    || ||    | ||||                       
CCGAAAAATGTTACAGACACTGAGTTGACTGATTTGTTTTCCAAATATGGGAATGTCACGGATTTGCAAATTTTGAGAGGTTCACAACAAACAAACAAAGgtaatatcctgcaaagaagttgctttccttatgaat-ggaatgataagcattgcctcaagtgtatattgttagttaactttgctctttgcag--------------------

upper sequence: LOC_Os01g71200.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA19G39300.1 (Glycine max), 5'ss of exon 4
CCAAAAAATGTAACGGACACCGAATTGACTGATTTATTTTCCAAATATGGAAATATCAAGGATTTACAGATTTTAAGGGGTTCACAACAAACAAGTAAAGgtga-gatctggtgaataacctattttcctaaccatttagagctagaagcactggttgactctggaactttacaatacctaatgtttttgttaaattaactgtgttattgcag
||||| |||||  | ||    ||| |  ||| | | || ||||| ||||||| ||| ||||||||||| |||||||| ||||| || ||||| ||||||||||  ||| ||    | | | || |         |||||  |||    |   |  || |||    |   |||   | | || |  | ||  |        |||| ||      
CCAAAGAATGTTTCTGAAGTTGAAATATCTGCTCTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTTAAGAGGTTCTCAGCAAACGAGTAAAGgtgctgatttg----acaccttaatcaatcctttatttaaggctttg-gtgtttcttaactgcaaagtgtta---ttcatagttctcttact-------ttgtggtag-----

upper sequence: LOC_Os01g71200.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA03G36650.2 (Glycine max), 5'ss of exon 4
CCAAAAAATGTAACGGACACCGAATTGACTGATTTATTTTCCAAATATGGAAATATCAAGGATTTACAGATTTTAAGGGGTTCACAACAAACAAGTAAAGgtgagatctggtgaataacctattttcctaaccatttagagctagaagcactggttgactctggaactttacaatacctaatgtttttgttaaattaactgtgttattgcag
||||| |||||  | ||    ||| |  ||| | | || ||||| ||||||| ||| ||||||||||| |||||||| || || || ||||| ||||||||||    ||| |   | ||  |||   | || | ||||    |  | ||  ||||            | |  | | | ||  ||| ||  ||  |    | | || | | ||
CCAAAGAATGTTTCTGAAGTTGAAATATCTGCTCTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTTAAGAGGCTCTCAGCAAACGAGTAAAGgtg----ctgatt--tcacacattaatc-aatccttta---tttaaggccttggt---------gtttcttaactgcatagagttattcatagttctcttattttgtggtag

upper sequence: LOC_Os01g71200.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA02G17090.1 (Glycine max), 5'ss of exon 4
CCAAAAAATGTAACGGACACCGAATTGACTGATTTATTTTCCAAATATGGAAATATCAAGGATTTACAGATTTTAAGGGGTTCACAACAAACAAGTAAAGgtga--gatctggtgaataacctattttcctaaccatttagagctagaagcactggttgactctggaactttaca-ataccta-atgtttttgttaaattaactgtgttattgcag
||||| ||| |  | ||    ||  |  |  || | || || || ||||||| ||| |||||||||||||||||||| ||||| || || |||||||||||||    || |     || |     ||   ||  |  || |||| |      ||  || |      | |||||    || ||  ||   |||||  |                   
CCAAAGAATATTTCTGAAGATGAGGTCTCCAATCTTTTCTCAAAGTATGGAACTATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCACACAAGTAAAGgtgcctaatgttacagatgaagccattctttattccctttgagc-attgtagcttcttaatagcaaagctttattcgtagctgtattcctttgtgtag------------------

upper sequence: LOC_Os01g71200.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA10G02700.3 (Glycine max), 5'ss of exon 3
CCAAAAAATGTAACGGACACCGAATTGACTGATTTATTTTCCAAATATGGAAATATCAAGGATTTACAGATTTTAAGGGGTTCACAACAAACAAGTAAAGgtga--gatctggtgaat-aacctattttcctaaccatttagagctagaagcactggttgactctggaactttacaatacctaatgtttttgttaaattaactgtgttattgcag
||||| ||| |  | ||    ||  |  ||||| | || || |  ||||||| ||| |||||||||||||||||||| ||||| || || |||||||||||||    || |     || || ||||  |     || ||| |   | | ||      || |      | |||||   |      ||| ||  ||  | ||               
CCAAAGAATATTTCTGAAGATGAGGTCTCTGATCTTTTCTCAATGTATGGAACTATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAGACAAGTAAAGgtgcctaatgttacagatgaagctatcctttattccttttgggcattgtagtttc--ttaatagcaaagctttat--tcatagctgtattcctttgagtag--------------