1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATTCACAACTGGCTTTTTGGCCTATTTGGACCGCTGCTTTGTTACACATAAGAAACTACCTTCGCTTGAAGACGCTGCTGCTACTTCTTTCTTTTCTCCAgtgagtgtcacgcaataattcttttagttaatattccatgtgcatttgtgataataatctgcttacgtatctatttctgtacacacaactgatcatgtccttctgccag
species | Oryza sativa |
transcript | LOC_Os01g70920.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGAAACTACCTTCGCTTGAAGACGCTGCTGCTACTTCTTTCTTTTCTCCA GTCTTTTCCTACTTCAATAATGAAATATCAGATGTTCTACTGACTCTGATTEST: gi|29656964|gb|CB653239.1|CB653239
genomic: AGAAACTACCTTCGCTTGAAGACGCTGCTGCTACTTCTTTCTTTTCTCCAgtgagtgtca ... cttctgccagGTCTTTTCCTACTTCAATAATGAAATATCAGATGTTCTACTGACTCTGATT
EST: AGAAACTACCTTCGCTTGAAGACGCTGCTGCTACTTCTTTCTTTTCTCCA GTCTTTTCCTACTTCAATAATGAAATATCAGATGTTCTACTGACTCTG
genomic: AGAAACTACCTTCGCTTGAAGACGCTGCTGCTACTTCTTTCTTTTCTCCAgtgagtgtca ... cttctgccagGTCTTTTCCTACTTCAATAATGAAATATCAGATGTTCTACTGACTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCACAACTGGCTTTTTGGCCTATTTGGACCGCTGCTTTGTTACACATAAGAAACTACCTTCGCTTGAAGACGCTGCTGCTACTTCTTTCTTTTCTCCAgtgagtgtcacgcaataattcttttagttaatattccatgtgcatttgtgataataatctgcttacgtatctatttctgtacacacaactgatcatgtccttctgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT