1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAGAGGCCAGGAGAAGTTCGTCTGCATCGTGGATCTCAAGGGCTGGGGTTACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAGgtaatatgaaagatcattcttcagttaattcagctaattaaacattactgaacaattaacaagcattcttacagattgatgatgattagttacatatttttcgttgcgtttgattaattccccctcgcag
species | Oryza sativa |
transcript | LOC_Os01g70210.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCAGAGCTTACATCGCGGCCATAGAGATCATGCAG AATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTACEST: gi|89176897|gb|CI013470.1|CI013470
genomic: TCAGAGCTTACATCGCGGCCATAGAGATCATGCAGgtaatatgaa ... cccctcgcagAATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTAC
EST: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAG AATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTACEST: gi|33666128|gb|CF297095.1|CF297095
genomic: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAGgtaatatgaa ... cccctcgcagAATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTAC
EST: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAG AATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTACEST: gi|88269525|gb|CI380823.1|CI380823
genomic: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAGgtaatatgaa ... cccctcgcagAATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTAC
EST: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAG AATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTACEST: gi|33662283|gb|CF293250.1|CF293250
genomic: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAGgtaatatgaa ... cccctcgcagAATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTAC
EST: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAG AATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTACEST: gi|33663142|gb|CF294109.1|CF294109
genomic: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAGgtaatatgaa ... cccctcgcagAATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTAC
EST: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAG AATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTACEST: gi|33664298|gb|CF295265.1|CF295265
genomic: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAGgtaatatgaa ... cccctcgcagAATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTAC
EST: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAG AATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTACEST: gi|27577459|gb|CB000154.1|CB000154
genomic: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAGgtaatatgaa ... cccctcgcagAATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTAC
EST: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAG AATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTACEST: gi|33677265|gb|CF305504.1|CF305504
genomic: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAGgtaatatgaa ... cccctcgcagAATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTAC
EST: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAG AATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTACEST: gi|86601296|gb|CI251670.1|CI251670
genomic: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAGgtaatatgaa ... cccctcgcagAATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTAC
EST: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAG AATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTACEST: gi|33662282|gb|CF293249.1|CF293249
genomic: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAGgtaatatgaa ... cccctcgcagAATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTAC
EST: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAG AATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTACEST: gi|88985097|gb|CI011948.1|CI011948
genomic: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAGgtaatatgaa ... cccctcgcagAATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTAC
EST: ACTCCAATTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAG AATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTACEST: gi|11565074|gb|AU165710.1|AU165710
genomic: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAGgtaatatgaa ... cccctcgcagAATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTAC
EST: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAG AATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTACEST: gi|18385341|gb|BM418540.1|BM418540
genomic: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAGgtaatatgaa ... cccctcgcagAATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTAC
EST: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAG AATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTAC
genomic: ACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAGgtaatatgaa ... cccctcgcagAATTACTACCCGGAGAGGCTCGGCAAGGCCCTGATGATCCATGTACCCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAGGCCAGGAGAAGTTCGTCTGCATCGTGGATCTCAAGGGCTGGGGTTACTCCAACTGCGACATCAGAGCTTACATCGCGGCCATAGAGATCATGCAGgtaatatgaaagatcattcttcagttaattcagctaattaaacattactgaacaattaacaagcattcttacagattgatgatgattagttacatatttttcgttgcgtttgattaattccccctcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA