1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGATGGTCTCTATGGAAGACATCTGCACGTGTATGACTGGCCTGGTGGTGAGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAGgtgcgtatcaaatgttgagactaaaagggatgcatcaagccgtcaacatatcaaataaccatatatcactgcttttcttctgtgcag
species | Oryza sativa |
transcript | LOC_Os01g68770.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAG GTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCTEST: gi|218496469|gb|FG953873.1|FG953873
genomic: CTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAGgtgcgtatca ... ttctgtgcagGTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCT
EST: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAG GTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCTEST: gi|4968771|gb|AU065675.1|AU065675
genomic: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAGgtgcgtatca ... ttctgtgcagGTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCT
EST: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAG GTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCTEST: gi|58658655|gb|CK047335.1|CK047335
genomic: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAGgtgcgtatca ... ttctgtgcagGTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCT
EST: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAG GTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCTEST: gi|33799340|gb|CF325529.1|CF325529
genomic: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAGgtgcgtatca ... ttctgtgcagGTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCT
EST: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAG GTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCTEST: gi|218504274|gb|FG947023.1|FG947023
genomic: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAGgtgcgtatca ... ttctgtgcagGTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCT
EST: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAG GTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCTEST: gi|58654482|gb|CK043162.1|CK043162
genomic: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAGgtgcgtatca ... ttctgtgcagGTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCT
EST: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAG GTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCTEST: gi|29656380|gb|CB652655.1|CB652655
genomic: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAGgtgcgtatca ... ttctgtgcagGTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCT
EST: GATTTAGGCAGTACAGGTCTTCTTCCACTTGAG GTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCTEST: gi|58686485|gb|CK075172.1|CK075172
genomic: GATTTAGGCAGTACAGGTCTTCTTCCACTTGAGgtgcgtatca ... ttctgtgcagGTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCT
EST: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAG GTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCTEST: gi|29642049|gb|CB647056.1|CB647056
genomic: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAGgtgcgtatca ... ttctgtgcagGTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCT
EST: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAG GTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCTEST: gi|58594459|gb|CF992767.1|CF992767
genomic: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAGgtgcgtatca ... ttctgtgcagGTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCT
EST: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAG GTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCTEST: gi|29660708|gb|CB656983.1|CB656983
genomic: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAGgtgcgtatca ... ttctgtgcagGTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCT
EST: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAG GTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCT
genomic: AGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAGgtgcgtatca ... ttctgtgcagGTGAGGTTTTTACATGATCCATCAAAGGATACTGGGTATGTGGGCTGTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGGTCTCTATGGAAGACATCTGCACGTGTATGACTGGCCTGGTGGTGAGCTCAAGCAGACACTAGATTTAGGCAGTACAGGTCTTCTTCCACTTGAGgtgcgtatcaaatgttgagactaaaagggatgcatcaagccgtcaacatatcaaataaccatatatcactgcttttcttctgtgcag
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