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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattccttttccctggaatactgaacttctccatatttatccatagtccatactgaggtagcttgaatgaccaaggatgttatcaaaaataggaaatggactgtgcagttcatatcaatggccttcgcatatccaacaacctacattgttgtttttatctatag

Basic information

species Oryza sativa
transcript LOC_Os01g68710.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g68710.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G031204_T01 (Zea mays), 5'ss of exon 4
GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattccttttccctggaatactgaacttctccatatttatccatagtccatactgaggtagcttgaatgaccaaggatgttatcaaaaataggaaatggactgtgcagttcatatcaatggccttcgcatatccaacaacctacattgttgttttt--atctatag
||| |||||||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |    ||||||| || | |  |||| || || ||| | |          ||| |||   |||  | ||| |          |||   | || ||||  | |||  || |||||    ||  ||    || |  ||||| |  |||||||||||  | || |||
GGGGCACTCACTGACGGATCAGTTTTTGATTCTGGCTATGACAGAGGTGACCCGTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgtcactgtccttccctgtaacaatagactt-tctatgtttttac----------ctgtggtgcattgtgtcaccgaa---------aaacggatgagatggcatatgccatttatatcggacgcgatcttgaattcgccaaccgattttgttgttttttcacctgtag

upper sequence: LOC_Os01g68710.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G153991_T01 (Zea mays), 5'ss of exon 4
GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattccttttccctgga---atactgaacttctccatatttatccatagtcca-------tactgaggtagcttga---atgaccaagg---atgttatc-----aaaaatag--gaaatggactgtgcagttcatatcaatggccttcgcatatccaacaacctacattgttgtttttatctatag
||| ||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |    || |||  |   | | | || || ||||| ||||||  | |||||       |||| |  |    ||    || |   | |   | || | |     |||||| |  |||||||  | |||  || |||| |   ||   |  | ||||  ||||  ||  ||| ||||  |||| |||
GGGACACTCACTGATGGATCAGTTTTCGATTCTAGCTATGACAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcctttcctatagccacaataaagtt-tccatgtttatctgtggtccagtgtccatactaaactgtactgggatataatataagcatacgtcacccaaaaaaaaatggatgaaatggcatatgccatttatatgacacgcaaccttaaatccgccaactgactctgtcgtttccatctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88723075|gb|CI746585.1|CI746585
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|86829393|gb|CI285036.1|CI285036
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|51946051|gb|CV152392.1|CV152392
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|55440369|gb|CV733494.1|CV733494
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|88723491|gb|CI747001.1|CI747001
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|55436956|gb|CV731667.1|CV731667
EST:     CAGAGGTGACCCCTTTAAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|55409944|gb|CV722320.1|CV722320
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|88723609|gb|CI747119.1|CI747119
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|88722134|gb|CI745461.1|CI745461
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAA
EST: gi|33659572|gb|CF282185.1|CF282185
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|55438455|gb|CV732524.1|CV732524
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|88344739|gb|CI624390.1|CI624390
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGGCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|88723542|gb|CI747052.1|CI747052
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|86829242|gb|CI284927.1|CI284927
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|11171677|gb|AU163906.1|AU163906
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|55436954|gb|CV731666.1|CV731666
EST:     CAGAGGTGACCCCTTTAAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|55433322|gb|CV729734.1|CV729734
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|88726773|gb|CI750428.1|CI750428
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|55413431|gb|CV725807.1|CV725807
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|2442348|gb|C74119.1|C74119
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGN-AAGTGATAAAAG                         GTTGGGACCAAGGGT-ACTAGGTATGTGTGTCGGTGAAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAA
EST: gi|55414253|gb|CV726629.1|CV726629
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|55412950|gb|CV725326.1|CV725326
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGAAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|88827090|gb|CI777655.1|CI777655
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|2442460|gb|C74231.1|C74231
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGGACCAAGGGTTACTANGTATGTGTGTCGGTGAAAAGAGGAAGCTA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGG-ACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTA
EST: gi|55441436|gb|CV734038.1|CV734038
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|33685240|gb|CF313479.1|CF313479
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|55413109|gb|CV725485.1|CV725485
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|88242499|gb|CI242348.1|CI242348
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|88276548|gb|CI397350.1|CI397350
EST:     CAGAGGTGACCCCTTTGAATTTACTCTT-GAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: gi|163928575|gb|EG711160.1|EG711160
EST:     CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG                         GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA