Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCAGCTGCCCGCGCTGCCAGCGCATGTGGCAGCTGCTCCGCCTCCACGCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatcacaatgtcacactcacacacccataaatgcgtcttttaaacatacgcttgaaaagatgaaaactagcgatatcatctaatctcactaaaatatcgttgaaagtctaaatgcgtatgcgtaatattcaattagcttacattgatctggttttgacttgggaaaaaaaaatctttgcattgtgtattgcag

Basic information

species Oryza sativa
transcript LOC_Os01g68020.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g68020.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G004161_T05 (Zea mays), 5'ss of exon 1
---GCACCAGCTGCCCGCGCTGCCAGCGCATGTGGCAGCTGCTCCGCCTCCACGCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatcacaatgtcacactcacacacccataaatgcgtcttttaaacatacgcttgaaaagatgaaaactagcgatatcat-ctaatctcactaaaatatcgttgaaagtctaaatgcgtatgcgtaatattcaattagcttacattgatctggttttgacttgggaaaaaaaaatctttgcattgtgtattgcag
   |||  |||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||||||||   |||||   | |||||||||||| |||||||||| || |          | | |   | |   | |   |||  |  |  |   | |  |     |  |     ||  |  | |  | ||  |  |    |                                                                                                     
ACCGCAAGAGCTGCGCGCGGTGCCAGCGCATGTGGCAGCTGCTCCGCCTCCACTCCGCGCTCTGCGACCGTACCGAC---CGCTGCAACACCCCGCTCTGCATgtaagcg---------ccgcgccgccgcttgcttcgttgcagccatccatggtccattgcgtgacctcgcgcctcacattgttgtgcttgtgccgtgcag----------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86501250|gb|CI143883.1|CI143883
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86253112|gb|CI058037.1|CI058037
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86494116|gb|CI136749.1|CI136749
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86483473|gb|CI126106.1|CI126106
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|89195474|gb|CI051587.1|CI051587
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|88214371|gb|CI214220.1|CI214220
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|89189934|gb|CI049473.1|CI049473
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86412785|gb|CI067190.1|CI067190
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|89181549|gb|CI113055.1|CI113055
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86503289|gb|CI145922.1|CI145922
EST:     CCGACGGCCCCTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGNCAGCGAAGGCGAAGGCAAA
genomic: CCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86419891|gb|CI054692.1|CI054692
EST:     CGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: CGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86487174|gb|CI129807.1|CI129807
EST:     CAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: CAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|88994311|gb|CI117265.1|CI117265
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86497529|gb|CI140162.1|CI140162
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86255409|gb|CI063898.1|CI063898
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86501431|gb|CI144064.1|CI144064
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|58030558|gb|CX728101.1|CX728101
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86253234|gb|CI058159.1|CI058159
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86413040|gb|CI067445.1|CI067445
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|88964608|gb|CI069956.1|CI069956
EST:     CACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: CACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86543427|gb|CI183633.1|CI183633
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|29670638|gb|CB666913.1|CB666913
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|88246276|gb|CI246125.1|CI246125
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|29667566|gb|CB663841.1|CB663841
EST:     GCCGCCCTTTGNGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|55410539|gb|CV722915.1|CV722915
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|88263665|gb|CI367439.1|CI367439
EST:     TGCAACACCCCTCTCTGCAT                         CCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: TGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86419290|gb|CI054091.1|CI054091
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|89185955|gb|CI047824.1|CI047824
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|88303860|gb|CI512934.1|CI512934
EST:     CCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: CCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|88958321|gb|CI095840.1|CI095840
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTGTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGTAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86491962|gb|CI134595.1|CI134595
EST:     CACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: CACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|88993412|gb|CI257840.1|CI257840
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACGGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGTCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|88264483|gb|CI368257.1|CI368257
EST:     CACCCCTCTCTGCAT                         CCAGTTCA-GAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: CACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86597862|gb|CI276648.1|CI276648
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|5038675|gb|AU070785.1|AU070785
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|88977059|gb|CI024796.1|CI024796
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|88248788|gb|CI248637.1|CI248637
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|87010079|gb|CI279176.1|CI279176
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|94362465|gb|CI052323.1|CI052323
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGNCAGCGAAGGCGAAGGCCAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|88228053|gb|CI227533.1|CI227533
EST:     TCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: TCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86255233|gb|CI062138.1|CI062138
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86420855|gb|CI056844.1|CI056844
EST:     CCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCCAA
genomic: CCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|88471597|gb|CI408868.1|CI408868
EST:     CACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCANCGAAGGCGAAGGCAAA
genomic: CACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|38478719|gb|CF962852.1|CF962852
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCCAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86496683|gb|CI139316.1|CI139316
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86497382|gb|CI140015.1|CI140015
EST:     GCCGCCCTTTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86500119|gb|CI142752.1|CI142752
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86527420|gb|CI167626.1|CI167626
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|88215654|gb|CI215503.1|CI215503
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTACAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|88991197|gb|CI108584.1|CI108584
EST:     GCCGCCCTCTGGGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86255244|gb|CI062149.1|CI062149
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|88384267|gb|CI551193.1|CI551193
EST:     GGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|89179665|gb|CI043944.1|CI043944
EST:     CGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: CGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86834235|gb|CI343995.1|CI343995
EST:     GCCGCCCTCTGCGACCTCCCCTACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86419649|gb|CI054450.1|CI054450
EST:     CGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: CGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86871444|gb|CI341670.1|CI341670
EST:     CCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: CCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
EST: gi|86500639|gb|CI143272.1|CI143272
EST:     GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCAT                         GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA
genomic: GCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 26 (upstream exon), 73 (downstream exon)
Score: 11

GCACCAGCTGCCCGCGCTGCCAGCGCATGTGGCAGCTGCTCCGCCTCCACGCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCTCTCTGCATgtgagtgatc ... tgtattgcagGCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAAGGCCGGCGATGATGACGATAAGTGGGGGCTTCTGGTGAAGAAGGTGAGG




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