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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGACATTGAACTCATGGCCAGTTTGGGTTTCCGTGCTTATAGATTTTCTATATCTTGGCCACGCATATTTCCTGgtatgttgagctaatcacatgagagcttcacatacaaaaattgcacatgccatgcatttccagatatatatgacatcctttttttcatcagtaatgcttcagatcatctttctatgattgagactaattttatcatgcctgcag

Basic information

species Oryza sativa
transcript LOC_Os01g67220.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g67220.3 (Oryza sativa), 5'ss of exon 4
lower sequence: AC155376.2_FGT005 (Zea mays), 5'ss of exon 4
GAAGACATTGAACTCATGGCCAGTTTGGGTTTCCGTGCTTATAGATTTTCTATATCTTGGCCACGCATATTTCCTGgtatgttgagctaatcacatgagagcttcacatacaaaa-attgcacatgccatgcatttccagatatatatgacatcctttttttcatcagtaatgcttcagatcatctttctatgattgagactaattttatcatgcctgcag
||||||||||| |||||||| ||| | |||||  | || || |||||||||||||||||| |||| ||||||||||||||| | |  | | || ||  ||| ||||  || |  | ||  || |  ||| |    | || |||| |   |  | |  || |   ||| |  |  | |||                                          
GAAGACATTGAGCTCATGGCAAGTCTAGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCACGTATATTTCCTGgtatggtaaaattaacatataggagattcatttatagcacatgacatagaccacg---atacaaatatttgc-attttccattgtctgtcaatgttaatgcag------------------------------------------

upper sequence: LOC_Os01g67220.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G044092_T01 (Zea mays), 5'ss of exon 4
GAAGACATTGAACTCATGGCCAGTTTGGGTTTCCGTGCTTATAGATTTTCTATATCTTGGCCACGCATATTTCCTGgtatgttgagctaatcacatgagagcttcacatacaaaaattgcacatgccatgcatttccagatatatat---gacatcctttttttcatcagtaatgcttcagatcatctttctatgattgagactaattttatcatgcctgcag
||||||||||| |||||||| ||| | |||||  | || || |||||||||||||||||| | || ||||||||||||||| | | || | |  ||   || | ||  |   | || ||||| || |||| |     | ||| ||||    |  | ||  |  |  ||| |  |  | |||                                          
GAAGACATTGAGCTCATGGCAAGTCTAGGTTTTAGCGCATACAGATTTTCTATATCTTGGGCGCGTATATTTCCTGgtatgctaaacttaccggatagaagatccatttt--ataactgcacgtgacatggaccatgatataaatatctgaattttctgctgcttctcaatgctaatacag------------------------------------------

upper sequence: LOC_Os01g67220.3 (Oryza sativa), 5'ss of exon 4
lower sequence: AT5G36890.1 (Arabidopsis thaliana), 5'ss of exon 4
GAAGACATTGAACTCATGGCCAGTTTGGGTTTCCGTGCTTATAGATTTTCTATATCTTGGCCACGCATATTTCCTGgtatgttgagctaatcacatgagagcttcacatacaaaaattgcacatgccatgcatttccagatatatatg-acatcctttttttcatcagtaatgcttcagatcatctttctatgattgagactaattttatcatgcctgcag
|||||  |||| || || |     || || ||| ||||||| |||||||||||||||||| | || || || ||||||||||| |  || |    ||     |  |  | | |   |   || | | |  |  ||  || ||  | || | |  || |  |   |  ||  |||                                               
GAAGATGTTGATCTTATAGGACAATTAGGATTCGGTGCTTACAGATTTTCTATATCTTGGTCTCGAATTTTCCCTGgtatgtttaaata-tattgtgttgtttatagttgctactttgttacttactaatccattttagttaattttggataaactataatgtgtgtgttctgcagt--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88575864|gb|CI670009.1|CI670009
EST:     GGGTTCCCGTGCTTATAGATCTTCTATATCTTGGCCACCCATATTTCCTG                         ATGGCCTGGGGAAAAATGTCAATGAGCAAGGAGTTGCCTTTTATAATGACC
genomic: GGGTTTCCGTGCTTATAGATTTTCTATATCTTGGCCACGCATATTTCCTGgtatgttgag ... atgcctgcagATGGCCTGGGGAAAAATGTCAATGAGCAAGGAGTTGCCTTTTATAATGACC