1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGAAAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGgtaaattaatgagcatgcacttctgttttatcgtgacttgaatctctgctgagtacaatttctttctgcagcag
species | Oryza sativa |
transcript | LOC_Os01g66420.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTG TCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATGAAEST: gi|7134950|gb|AU082754.1|AU082754
genomic: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGgtaaattaat ... tctgcagcagTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATGAA
EST: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGEST: gi|89187194|gb|CI047261.1|CI047261
genomic: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGT---Ggtaaattaat ... tctgcagc
EST: TCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTG TCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATGAAEST: gi|218504195|gb|FG956553.1|FG956553
genomic: TCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGgtaaattaat ... tctgcagcagTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATGAA
EST: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTG TCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATGAAEST: gi|38478593|gb|CF962726.1|CF962726
genomic: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGgtaaattaat ... tctgcagcagTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATGAA
EST: AGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGGGCGAAAGTGCAG TCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATGAEST: gi|58595326|gb|CF993634.1|CF993634
genomic: AGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGT---Ggtaaattaat ... tctgcagcagTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATGA
EST: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAG
genomic: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGT---Ggtaaattaat ... tctgcagc
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGAAAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGgtaaattaatgagcatgcacttctgttttatcgtgacttgaatctctgctgagtacaatttctttctgcagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA