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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCGTGGAGTTCATGCCGTTCCTGCTCTCCCTGTCCGTGTTCCTGTGCGGCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttactcatcgtctttcttttcgctgtcaattgctgcaagcctacaagcaacctgtcgacgttgattacagaaagatacgtaacctgacgacgaga...

Basic information

species Oryza sativa
transcript LOC_Os01g65880.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g65880.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA13G09140.1 (Glycine max), 5'ss of exon 5
GAGCGTGGAGTTCATGCCGTTCCTGCTCTCCCTGTCCGTGTTCCTGTGCGGCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttactcatcgtctttcttttcgct-gtcaatt----gctgcaagcctacaagcaacctgtcgacgttgattacagaaagatacgtaacctgacgacgaga
|||||||||||||||||| ||| | ||||| || |  |||||||| || ||||| || |||||||||||||| || || ||||| ||||| ||  | || |||| |  | ||    | || |   || |  ||| ||      || |    |||||   |  |    |   | | ||   ||| ||||   |    |        
GAGCGTGGAGTTCATGCCCTTCTTCCTCTCACTCTTTGTGTTCCTCTGTGGCACATCTTGGTTCATCTACGGGCTACTAGGCCGTGACCCATTTGTGGCTgtaagtagcacactcacattatccacgtttatcagttttcaattggatcaatacaatacaaatacaaaatgtcactatttaaacataccctattgtattg-----

upper sequence: LOC_Os01g65880.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA14G27610.1 (Glycine max), 5'ss of exon 5
GAGCGTGGAGTTCATGCCGTTCCTGCTCTCCCTGTCCGTGTTCCTGTGCGGCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttactcatcgtctttcttttcgct--gtcaattgctgcaagcctacaagcaacctgtcgacgttgattacagaaagatacgtaacctgacgacgaga----------------------
|||||||||||||||||| ||| | ||||| || |  |||||||| || || || || |||||||||||||| || || ||||| ||||| ||  | || |||| |  | ||    | || |   || |   ||||||       |  |  |  |||           |  | ||      | || || |||   |    |                       
GAGCGTGGAGTTCATGCCCTTCTTCCTCTCACTCTTTGTGTTCCTCTGTGGTACTTCTTGGTTCATCTACGGGCTACTAGGCCGTGACCCATTTGTGGCTgtaagtagcacactaacattatccacgttttatcaattttcaattggatcaatacaatacaatacaaattgtcactattttaaacttaccctcttgggttgcaattggcttgtattgaacgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58673060|gb|CK061746.1|CK061746
EST:     GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG                         ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: gi|11172087|gb|AU164110.1|AU164110
EST:     GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG                         ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: gi|86598411|gb|CI355028.1|CI355028
EST:     GCACCTCCTGGTTCATGTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG                         ATCCCCAATGGATTCGGGAGCTTTCTGGGCTTGATCCAGCTGATCCTCTAC
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: gi|11026129|gb|AU162730.1|AU162730
EST:     GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG                         ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: gi|8856858|gb|AU094176.1|AU094176
EST:     GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG                         ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: gi|88481240|gb|CI418511.1|CI418511
EST:     CGGCCTGCTCGGCCGCGACCCTTTCATCGCG                         ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTTTAC
genomic: CGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: gi|58674455|gb|CK063141.1|CK063141
EST:     GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG                         ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC