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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCCTCCTGGCCCTGCACGGCCAGGGCCGCAAGCTCTTCTGCGGCCTCGCCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagtacacaccacacaaatgatctagtatagtacttctttcgtttcacaatgtaagtcattctagcatttttcacatttatattgatattaatg...

Basic information

species Oryza sativa
transcript LOC_Os01g65880.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g65880.3 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv18s0001g15330.t01 (Vitis vinifera), 5'ss of exon 4
CTCCCTCCTGGCCCTGCACGGCCAGGGCCGCAAGCTCTTCTGCGGCCTCGCCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaaga-cagtacacaccacacaaatgatctagtatagtacttctttcgtttcacaatgtaagtcattctagcatttttcacatttatattgatattaatg---
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CTCCCTCTTCGCCTTACATGGCCATAGCAGGAAGCTCTTCTGTGGTTTGGCCGCCACCATTTTCTCCATCATCATGTATGCATCACCTCTGTCCATCATGgtaagctcagtttactcccttt---ttctttagta----gtctcttgaataagacagactggattgga-tgggattaaactccctgattattatgtaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117218417|gb|CT858164.1|CT858164
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
EST: gi|58673060|gb|CK061746.1|CK061746
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
EST: gi|58671599|gb|CK060285.1|CK060285
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
EST: gi|11172087|gb|AU164110.1|AU164110
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
EST: gi|58686371|gb|CK075058.1|CK075058
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCC
EST: gi|11026129|gb|AU162730.1|AU162730
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
EST: gi|58666605|gb|CK055291.1|CK055291
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
EST: gi|58596723|gb|CK007251.1|CK007251
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGT
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGT
EST: gi|58687982|gb|CK076669.1|CK076669
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
EST: gi|8856858|gb|AU094176.1|AU094176
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
EST: gi|25797892|gb|CA753853.1|CA753853
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
EST: gi|29684974|gb|CB681249.1|CB681249
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGGTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
EST: gi|29658996|gb|CB655271.1|CB655271
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
EST: gi|58674455|gb|CK063141.1|CK063141
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC