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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGCATCAGAACGGACACCTCAGCATCACTTGAAAGAAGAGGCAGAATCAGTGATGCAACAATTGGTGACTTGTGTTCAGTGCACAGCTgtaagtaatgattatctgtcttgtcaacattgccttgtaatgctgtttatccactaggtctgtaatttttatttaccatactatagcgagacaaaggctg...

Basic information

species Oryza sativa
transcript LOC_Os01g65330.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g65330.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G046846_T01 (Zea mays), 5'ss of exon 5
GTTTGCATCAGAACGGACACCTCAGCATCACTTGAAAGAAGAGGCAGAATCAGTGATGCAACAATTGGTGACTTGTGTTCAGTGCACAGCTgtaagtaatgattatctgtcttgtcaacattgccttgtaatgctgtttatccactaggtctgtaatttttatttaccatactatagcgagacaaaggctg----
|||  ||||||||| ||| ||||| |||||  |||||||||||||||||||||| |||||  |||| ||||||| ||||||||  |||||||||||| ||  |||| | |||||  | || ||   |||| ||   ||| ||    ||| |  ||| |   ||||| || ||| ||   ||  |||         
GTTGACATCAGAACAGACTCCTCAACATCAACTGAAAGAAGAGGCAGAATCAGTAATGCAGGAATTAGTGACTTCTGTTCAGTTTACAGCTgtaagttatatttatgtatcttgaaagcaatgttatgtagtggcatttgtc----aggccaataactacaatttagcagactgtaaacagtaaaacataaatgc

upper sequence: LOC_Os01g65330.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G148773_T02 (Zea mays), 5'ss of exon 4
GTTTGCATCAGAACGGACACCTCAGCATCACTTGAAAGAAGAGGCAGAATCAGTGATGCAACAATTGGTGACTTGTGTTCAGTGCACAGCTgtaagtaatgattatctgtcttgtcaacattgccttgtaatgctgtttatccactaggtctgtaatttttatttaccatactatagcgagacaaaggctg
| | |||||||||| ||| ||||| ||||| ||||||||||||||||||||||| |||||  | || ||||||| ||||||||  |||||||||||||||  |||| |  ||||  |||| |||| |||| ||   | | || |  ||||   | | | |  |||| || ||| ||   ||  ||| |   
GCTGGCATCAGAACTGACTCCTCAACATCAATTGAAAGAAGAGGCAGAATCAGTAATGCAGGAGTTCGTGACTTCTGTTCAGTTTACAGCTgtaagtaatatttatgtaccttggaaacaatgccatgtagtgacatctgtctatcaggttaatgactatagtttagcagactgtaaacagcaaaatgtaa

upper sequence: LOC_Os01g65330.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA06G16680.1 (Glycine max), 5'ss of exon 3
-GTTTGCATCAGAACGGACACCTCAGCATCACTTGAAAGAAGAGGCAGAATCAGTGATGCAACAATTGGTGACTTGTGTTCAGTGCACAGCTgtaagtaatgattatctgtcttgtcaacattgccttgtaatgctgtttatccactaggtctgtaatttttatttaccatactatagcgagacaaaggctg----
 ||| |||    |    |      |  ||   |  | ||| |||||||||||| | |||||||||||| ||||||  |||||||  |||||||| |||     |  ||||||     |  |  | ||  || || |  |     ||| |  ||  || ||||       | | ||||  || |  ||         
GGTTAGCAAAGAATTAAATGGTCAAAGATTG-TCAAGAGACGAGGCAGAATCAATAATGCAACAATTGATGACTTTAGTTCAGTTTACAGCTgtgagtgtatttcttctgtcactaaagaaaaggct--tagtgtttctcgaggactggtact--aacttttgaagctgacaatataaggaaattaaaaagaagaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29680203|gb|CB676478.1|CB676478
EST:     AGGCAGAATCAGTGATGCAACAATTGGTGACTTGTGTTCAGTGCACAGCT                         GAACTATACCATGAAATGCATGCACTGGATAGATTTGAACAAGATTATCAG
genomic: AGGCAGAATCAGTGATGCAACAATTGGTGACTTGTGTTCAGTGCACAGCTgtaagtaatg ... tttttttcagGAACTATACCATGAAATGCATGCACTGGATAGATTTGAACAAGATTATCAG
EST: gi|33799472|gb|CF325594.1|CF325594
EST:     AGGCAGAATCAGTGATGCAACAATTGGTGACTTGTGTTCAGTGCACAGCT                         GAACTATACCATGAAATGCATGCACTGGATAGATTTGAACAAGATTATCAG
genomic: AGGCAGAATCAGTGATGCAACAATTGGTGACTTGTGTTCAGTGCACAGCTgtaagtaatg ... tttttttcagGAACTATACCATGAAATGCATGCACTGGATAGATTTGAACAAGATTATCAG