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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCTCCGAAAAGTAAAGTTATTTGGCTACCGGGTGTTTTTAATTTATGCGgtaagatttgggctaatagttatttgagctaatacctccatctatgctagtcattagtgtgattatgcaattctaattgctgaacttttggtgctgccttcttag

Basic information

species Oryza sativa
transcript LOC_Os01g63870.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g63870.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G095611_T01 (Zea mays), 5'ss of exon 6
TACCTCCGAAAAGTAAAGTTATTTGGCTACCGGGTGTTTTTAATTTATGCGgtaagatttgggctaat--agttat----ttgagctaatacctccatctatgctagtcattagtgtgattatgcaattctaattgctgaacttttggtgctgccttcttag
|||||||| ||| ||||| ||||||| ||| | |||||| | ||||||||||||||||||   || ||  ||||||    ||||   |||   |  |||| ||||      | || |||| |||  |  |||||| |||||||  || ||||||||  ||||
TACCTCCGGAAAATAAAGCTATTTGGGTACAGAGTGTTTCTTATTTATGCGgtaagattttctcttatgaagttatgatgttgattgaatgtgtggatctgtgctgcatgctggt-tgat-atgagaggctaatttctgaactactgatgctgcctctttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58659627|gb|CK048307.1|CK048307
EST:     ACCTCCGAAAAGTAAAGTTATTTGGCTACCGGGTGTTTTTAATTTATGCG                         GTTCCTCTTGCTCTAGGGATCACATGGGCTATCGCTTTTGTTCTAACAGCA
genomic: ACCTCCGAAAAGTAAAGTTATTTGGCTACCGGGTGTTTTTAATTTATGCGgtaagatttg ... gccttcttagGTTCCTCTTGCTCTAGGGATCACATGGGCTATCGCTTTTGTTCTAACAGCA
EST: gi|58658393|gb|CK047073.1|CK047073
EST:     ACCTCCGAAAAGTAAAGTTATTTGGCTACCGGGTGTTTTTAATTTATGCG                         GTTCCTCTTGCTCTAGGGATCACATGGGCTATCGCTTTTGTTCTAACAGCA
genomic: ACCTCCGAAAAGTAAAGTTATTTGGCTACCGGGTGTTTTTAATTTATGCGgtaagatttg ... gccttcttagGTTCCTCTTGCTCTAGGGATCACATGGGCTATCGCTTTTGTTCTAACAGCA
EST: gi|58652789|gb|CK041469.1|CK041469
EST:     ACCTCCGAAAAGTAAAGTTATTTGGCTACCGGGTGTTTTTAATTTATGCG                         GTTCCTCTTGCTCTAGGGATCACATGGGCTATCGCTTTTGTTCTAACAGCA
genomic: ACCTCCGAAAAGTAAAGTTATTTGGCTACCGGGTGTTTTTAATTTATGCGgtaagatttg ... gccttcttagGTTCCTCTTGCTCTAGGGATCACATGGGCTATCGCTTTTGTTCTAACAGCA
EST: gi|58654749|gb|CK043429.1|CK043429
EST:     ACCTCCGAAAAGTAAAGTTATTTGGCTACCGGGTGTTTTTAATTTATGCG                         GTTCCTCTTGCTCTAGGGATCACATGGGCTATCGCTTTTGTTCTAACAGCA
genomic: ACCTCCGAAAAGTAAAGTTATTTGGCTACCGGGTGTTTTTAATTTATGCGgtaagatttg ... gccttcttagGTTCCTCTTGCTCTAGGGATCACATGGGCTATCGCTTTTGTTCTAACAGCA
EST: gi|58656604|gb|CK045284.1|CK045284
EST:     ACCTCCGAAAAGTAAAGTTATTTGGCTACCGGGTGTTTTTAATTTATGCG                         GTTCCTCTTGCTCTAGGGATCACATGGGCTATCGCTTTTGTTCTAACAGCA
genomic: ACCTCCGAAAAGTAAAGTTATTTGGCTACCGGGTGTTTTTAATTTATGCGgtaagatttg ... gccttcttagGTTCCTCTTGCTCTAGGGATCACATGGGCTATCGCTTTTGTTCTAACAGCA
EST: gi|58655477|gb|CK044157.1|CK044157
EST:     ACCTCCGAAAAGTAAAGTTATTTGGCTACCGGGTGTTTTTAATTTATGCG                         GTTCCTCTTGCTCTAGGGATCACATGGGCTATCGCTTTTGTTCTAACAGCA
genomic: ACCTCCGAAAAGTAAAGTTATTTGGCTACCGGGTGTTTTTAATTTATGCGgtaagatttg ... gccttcttagGTTCCTCTTGCTCTAGGGATCACATGGGCTATCGCTTTTGTTCTAACAGCA