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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctttctacattgtctagaaacataggattttttttcatgtcagctttatagcaactagaatgcgggcagctactggtttagcaaggccaggaa...

Basic information

species Oryza sativa
transcript LOC_Os01g62420.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g62420.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G146206_T01 (Zea mays), 5'ss of exon 1
---------------TGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctttctacattgtctagaaacataggattttttttca-tgtca-gctttatagcaactagaatgcgggcagctactggtttagcaaggccaggaa
               ||| |||||| |||| |||||||||||||| ||||| ||| ||||||| |||||||| ||||| ||| |||| ||||| |||||||||||  | || || | |  | ||   |    ||||| ||||   || || | | |     | ||    |   | || ||     |   |         |  
GTTTTCTTGTTTCAGTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGATgtgagaaccttttaaact--caagttgctgttgatttattttagctgacatgatctgatttatcttctctattgacaactcacattcctgtgttattttgct

upper sequence: LOC_Os01g62420.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G146206_T02 (Zea mays), 5'ss of exon 4
TGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctttctacattgtctagaaacataggattttttttca-tgtca-gctttatagcaactagaatgcgggcagctactggtttagcaaggccaggaa
                         ||||| ||||| ||| ||||||| |||||||| ||||| ||| |||| ||||| |||||||||||  | || || | |  | ||   |    ||||| ||||   || || | | |     | ||    |   | || ||     |   |         |  
-------------------------GTGCCCTGGGTCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGATgtgagaaccttttaaact--caagttgctgttgatttattttagctgacatgatctgatttatcttctctattgacaactcacattcctgtgttattttgct

upper sequence: LOC_Os01g62420.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G146206_T04 (Zea mays), 5'ss of exon 4
TGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctttctacattgtctagaaacataggattttttttca-tgtca-gctttatagcaactagaatgcgggcagctactggtttagcaaggccaggaa
||| |||||| |||| |||||||||||||| ||||| ||| ||||||| |||||||| ||||| ||| |||| ||||| |||||||||||  | || || | |  | ||   |    ||||| ||||   || || | | |     | ||    |   | || ||     |   |         |  
TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGATgtgagaaccttttaaact--caagttgctgttgatttattttagctgacatgatctgatttatcttctctattgacaactcacattcctgtgttattttgct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33666777|gb|CF297744.1|CF297744
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TNTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33693438|gb|CF321677.1|CF321677
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33793081|gb|CF322423.1|CF322423
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33692149|gb|CF320388.1|CF320388
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33694018|gb|CF322257.1|CF322257
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33689964|gb|CF318203.1|CF318203
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGGATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33690687|gb|CF318926.1|CF318926
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33828594|gb|CF340117.1|CF340117
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33827559|gb|CF339596.1|CF339596
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33690113|gb|CF318352.1|CF318352
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33692177|gb|CF320416.1|CF320416
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33692251|gb|CF320490.1|CF320490
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33688513|gb|CF316752.1|CF316752
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33685938|gb|CF314177.1|CF314177
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33689979|gb|CF318218.1|CF318218
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TNTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33692667|gb|CF320906.1|CF320906
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33690102|gb|CF318341.1|CF318341
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|58597190|gb|CK007718.1|CK007718
EST:     TGATACTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAGGTGAT                         TTTGTTGCTGACAAAATTGCGTACACACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33689283|gb|CF317522.1|CF317522
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33691585|gb|CF319824.1|CF319824
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33687151|gb|CF315390.1|CF315390
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33685460|gb|CF313699.1|CF313699
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|58679577|gb|CK068264.1|CK068264
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACACACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|58683989|gb|CK072676.1|CK072676
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACACACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33826932|gb|CF339275.1|CF339275
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33828691|gb|CF340165.1|CF340165
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33692942|gb|CF321181.1|CF321181
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33829645|gb|CF340645.1|CF340645
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33828383|gb|CF340010.1|CF340010
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33691808|gb|CF320047.1|CF320047
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|58669404|gb|CK058090.1|CK058090
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACACACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33689638|gb|CF317877.1|CF317877
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|58674808|gb|CK063495.1|CK063495
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACACACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|163927744|gb|EG712492.1|EG712492
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAA
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAA
EST: gi|33693863|gb|CF322102.1|CF322102
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33685357|gb|CF313596.1|CF313596
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33801873|gb|CF326808.1|CF326808
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33692386|gb|CF320625.1|CF320625
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33688347|gb|CF316586.1|CF316586
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TNTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33691552|gb|CF319791.1|CF319791
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33688724|gb|CF316963.1|CF316963
EST:     TGACTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|33690870|gb|CF319109.1|CF319109
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: gi|58682138|gb|CK070825.1|CK070825
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACACACTT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTT
EST: gi|5003199|gb|AU068308.1|AU068308
EST:     TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT                         TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctttctacattgtctagaaacataggattttttttcatgtcagctttatagcaactagaatgcgggcagctactggtttagcaaggccaggaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT