1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAATACTTGTCTTTGCCTCTGTTATGGCGACACTTGGCCTTCAGATCATCCTAGAATCAGTACGCTCGTTGTTGTCTGATgtaagtctgctgatgttttgttggccttgaactcctactctcattttgcttttgaccagaaactttgcctgaggatttcttttctagaacgataagtgtctttgatgtttgttggctttgaaattctgttgtagcttgccatatacctttctgattgctgaacttattgtcttgttctccag
species | Oryza sativa |
transcript | LOC_Os01g62070.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CACTTGGCCTTCAGATCATCCTAGAATCAGTACGCTCGTTGTTGTCTGAT GGGGATGAGTTCAGCTTGACAAAAGAGCAAGAAAAGTGGGTTGTGGACATCEST: gi|33364700|gb|BP433013.1|BP433013
genomic: CACTTGGCCTTCAGATCATCCTAGAATCAGTACGCTCGTTGTTGTCTGATgtaagtctgc ... tgttctccagGGGGATGAGTTCAGCTTGACAAAAGAGCAAGAAAAGTGGGTTGTGGACATC
EST: CACTTGGCCTTCAGATCATCCTAGAATCAGTACGCTCGTTGTTGTCTGAT GGGGATGAGTTCAGCTTGACAAAAGAGCAAGAAAAGTGGGTTGTGGACATCEST: gi|29620907|gb|CB625918.1|CB625918
genomic: CACTTGGCCTTCAGATCATCCTAGAATCAGTACGCTCGTTGTTGTCTGATgtaagtctgc ... tgttctccagGGGGATGAGTTCAGCTTGACAAAAGAGCAAGAAAAGTGGGTTGTGGACATC
EST: AATCAGTACGCTCGTTGTTGTCTGAT GGGGATGAGTTCAGCTTGACAAAAGAGCAAGAAAAGTGGGTTGTGGACATC
genomic: AATCAGTACGCTCGTTGTTGTCTGATgtaagtctgc ... tgttctccagGGGGATGAGTTCAGCTTGACAAAAGAGCAAGAAAAGTGGGTTGTGGACATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATACTTGTCTTTGCCTCTGTTATGGCGACACTTGGCCTTCAGATCATCCTAGAATCAGTACGCTCGTTGTTGTCTGATgtaagtctgctgatgttttgttggccttgaactcctactctcattttgcttttgaccagaaactttgcctgaggatttcttttctagaacgataagtgtctttgatgtttgttggctttgaaattctgttgtagcttgccatatacctttctgattgctgaacttattgtcttgttctccag
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