1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AACTCAAATATACTCTAGAAGGGTGAAGATGGAGGAGGAAAAACAGGCTCTTCAAAGGCAGCTACAATTAAAGCATCAGAGGGAACTTGAGAAAATGAAGgtaagcactccgtaatccttccaagatcctatagattcttttatcggtattttttcttctttacagtctacaagcataaatcacttatggagcctacttg...
species | Oryza sativa |
transcript | LOC_Os01g61720.8 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCAAAGGCAGCTACAATTAAAGCATCAGAGGGAACTTGAGAAAATGAAG ATTGATGAAGATTGGGATCATAGCCATCAGTCCAAGGAGCAGGTTGAGACCEST: gi|58596535|gb|CK007063.1|CK007063
genomic: TTCAAAGGCAGCTACAATTAAAGCATCAGAGGGAACTTGAGAAAATGAAGgtaagcactc ... tcattgacagATTGATGAAGATTGGGATCATAGCCATCAGTCCAAGGAGCAGGTTGAGACC
EST: TTCAAAGGCAGCTACAATTAAAGCATCAGAGGGAACTTGAGAAAATGAAG ATTGATGAAGATTGGGATCATAGCCATCAGTCCAAGGAGCAGGTTGAGACCEST: gi|58678220|gb|CK066907.1|CK066907
genomic: TTCAAAGGCAGCTACAATTAAAGCATCAGAGGGAACTTGAGAAAATGAAGgtaagcactc ... tcattgacagATTGATGAAGATTGGGATCATAGCCATCAGTCCAAGGAGCAGGTTGAGACC
EST: TTCAAAGGCAGCTACAATTAAAGCATCAGAGGGAACTTGAGAAAATGAAG ATTGATGAAGATTGGGATCATAGCCATCAGTCCAAGGAGCAGGTTGAGACCEST: gi|58680909|gb|CK069596.1|CK069596
genomic: TTCAAAGGCAGCTACAATTAAAGCATCAGAGGGAACTTGAGAAAATGAAGgtaagcactc ... tcattgacagATTGATGAAGATTGGGATCATAGCCATCAGTCCAAGGAGCAGGTTGAGACC
EST: TTCAAAGGCAGCTACAATTAAAGCATCAGAGGGAACTTGAGAAAATGAAG ATTGATGAAGATTGGGATCATAGCCATCAGTCCAAGGAGCAGGTTGAGACCEST: gi|58689149|gb|CK077836.1|CK077836
genomic: TTCAAAGGCAGCTACAATTAAAGCATCAGAGGGAACTTGAGAAAATGAAGgtaagcactc ... tcattgacagATTGATGAAGATTGGGATCATAGCCATCAGTCCAAGGAGCAGGTTGAGACC
EST: TTCAAAGGCAGCTACAATTAAAGCATCAGAGGGAACTTGAGAAAATGAAG ATTGATGAAGATTGGGATCATAGCCATCAGTCCAAGGAGCAGGTAGAGACC
genomic: TTCAAAGGCAGCTACAATTAAAGCATCAGAGGGAACTTGAGAAAATGAAGgtaagcactc ... tcattgacagATTGATGAAGATTGGGATCATAGCCATCAGTCCAAGGAGCAGGTTGAGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTCAAATATACTCTAGAAGGGTGAAGATGGAGGAGGAAAAACAGGCTCTTCAAAGGCAGCTACAATTAAAGCATCAGAGGGAACTTGAGAAAATGAAGgtaagcactccgtaatccttccaagatcctatagattcttttatcggtattttttcttctttacagtctacaagcataaatcacttatggagcctacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT