1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TAGCCATCAGTCCAAGGAGCAGGTTGAGACCAGCCTAATGATGAAACAAGAAGCTGCGCTAAGGCGGGAAAGAGCTCTTGCCTATGCATTTTCTCACCAGgcaagtttcctctttgaattactcacttttcttgttattttcctccttattcttacctattgtagctttaagtgatatctcgatagatgtaattgtatatctcgttactaaaaaaagccccttctctgttttgactcctgcag
species | Oryza sativa |
transcript | LOC_Os01g61720.6 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGCTGCGCTAAGGCGGGAAAGAGCTCTTGCCTATGCATTTTCTCACCAG TGGAAGAATTCTGGCCGAACTATAACACCTACCTTCACGGATCAAGGGAATEST: gi|29677325|gb|CB673600.1|CB673600
genomic: AAGCTGCGCTAAGGCGGGAAAGAGCTCTTGCCTATGCATTTTCTCACCAGgcaagtttcc ... actcctgcagTGGAAGAATTCTGGCCGAACTATAACACCTACCTTCACGGATCAAGGGAAT
EST: AAGCTGCGCTAAGGCGGGAAAGAGCTCTTGCCTATGCATTTTCTCACCAG TGGAAGAATTCTGGCCGAACTATAACACCTACCTTCACGGATCAAGGGGAAEST: gi|163928753|gb|EG709706.1|EG709706
genomic: AAGCTGCGCTAAGGCGGGAAAGAGCTCTTGCCTATGCATTTTCTCACCAGgcaagtttcc ... actcctgcagTGGAAGAATTCTGGCCGAACTATAACACCTACCTTCACGGATCAAGGG-AA
EST: AGAGCTCTTGCCTATGCATTTTCTCACCAG TGGAAGAATTCTGGCCGAACTATAACACCTACCTTCACGGATCAAGGGAATEST: gi|58680909|gb|CK069596.1|CK069596
genomic: AGAGCTCTTGCCTATGCATTTTCTCACCAGgcaagtttcc ... actcctgcagTGGAAGAATTCTGGCCGAACTATAACACCTACCTTCACGGATCAAGGGAAT
EST: AAGCTGCGCTAAGGCGGGAAAGAGCTCTTGCCTATGCATTTTCTCACCAG TGGAAGAATTCTGGCCGAACTATAACACCTACCTTCACGGATCAAGGGAAT
genomic: AAGCTGCGCTAAGGCGGGAAAGAGCTCTTGCCTATGCATTTTCTCACCAGgcaagtttcc ... actcctgcagTGGAAGAATTCTGGCCGAACTATAACACCTACCTTCACGGATCAAGGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGCCATCAGTCCAAGGAGCAGGTTGAGACCAGCCTAATGATGAAACAAGAAGCTGCGCTAAGGCGGGAAAGAGCTCTTGCCTATGCATTTTCTCACCAGgcaagtttcctctttgaattactcacttttcttgttattttcctccttattcttacctattgtagctttaagtgatatctcgatagatgtaattgtatatctcgttactaaaaaaagccccttctctgttttgactcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT