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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCACTGTGTGTCCTGTGCAATCCATGCTCACATCGTCCGTGTCCGCTCCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatccccgcctcttaactattatatctagtgcttaattgatagtgtaattagtatatcatgatcggaacgatttcctttatctgttactgcaga...

Basic information

species Oryza sativa
transcript LOC_Os01g60790.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g60790.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G827266_T03 (Zea mays), 5'ss of exon 4
GCATCACTGTGTGTCCTGTGCAATCCATGCTCACATCGTCCGTGTCCGCTCCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatccccgcctcttaactattatatctagtgcttaattgatagtgtaattagtatatcatgatcggaacgatttcctttatctgttactgcaga---
||| ||||| || || || || ||||| |||||||||||||| ||||| ||||||||||| || |||||||||| ||| ||||| |||||| | |||||||||      |  |      |  |   |  || ||| | |  || |       | ||||  | | || ||  |||     |     ||  |||  |    |   
GCACCACTGCGTCTCGTGCGCGATCCACGCTCACATCGTCCGCGTCCGATCCCGTGAGAAGCGCAGGGACCGCAAGCCGCCGGAGCGCTTCAGGCGCAGGgtatgattacatcattctatcgccgatcgatttagcgttctatcgccgaccgatttagcgt-ttataat--gaatatcctgtgaaataagttgttaagaagga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58689839|gb|CK078526.1|CK078526
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|86529528|gb|CI169734.1|CI169734
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88427794|gb|CI551736.1|CI551736
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88429630|gb|CI548920.1|CI548920
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|87037440|gb|CI192062.1|CI192062
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88323655|gb|CI556286.1|CI556286
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88207575|gb|CI207424.1|CI207424
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88846265|gb|CI373033.1|CI373033
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTG-TGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|86530521|gb|CI170727.1|CI170727
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88838536|gb|CI375084.1|CI375084
EST:     CCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGG
genomic: CCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCG-CCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGG
EST: gi|88543171|gb|CI473158.1|CI473158
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88208105|gb|CI207954.1|CI207954
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|33795579|gb|CF323659.1|CF323659
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|86425643|gb|CI070740.1|CI070740
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|29682993|gb|CB679268.1|CB679268
EST:     CCCGTGACAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|87023087|gb|CI280104.1|CI280104
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGG-TAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|86423700|gb|CI062461.1|CI062461
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|87025450|gb|CI267816.1|CI267816
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|87014635|gb|CI269342.1|CI269342
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|2280933|gb|C25428.1|C25428
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAANGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCACCGCTCCTGG
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTC-CCGCTCCTGG
EST: gi|66915362|gb|CX102210.1|CX102210
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|58594740|gb|CF993048.1|CF993048
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCT
EST: gi|88240155|gb|CI239317.1|CI239317
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88211886|gb|CI211526.1|CI211526
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88427902|gb|CI554410.1|CI554410
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|218503117|gb|FG965412.1|FG965412
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88206854|gb|CI205170.1|CI205170
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88242199|gb|CI242048.1|CI242048
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88209059|gb|CI208908.1|CI208908
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|218500719|gb|FG955415.1|FG955415
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|86831558|gb|CI299616.1|CI299616
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|86526546|gb|CI166752.1|CI166752
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88439707|gb|CI541264.1|CI541264
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTGCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88488823|gb|CI426094.1|CI426094
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|38475607|gb|CF959740.1|CF959740
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88205411|gb|CI205260.1|CI205260
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|86511192|gb|CI153825.1|CI153825
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|86528779|gb|CI168985.1|CI168985
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88432169|gb|CI563000.1|CI563000
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88211899|gb|CI211539.1|CI211539
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88465720|gb|CI524670.1|CI524670
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88380688|gb|CI521257.1|CI521257
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|86423419|gb|CI062180.1|CI062180
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88902972|gb|CI088510.1|CI088510
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|58030689|gb|CX728232.1|CX728232
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88283262|gb|CI404708.1|CI404708
EST:     CCGTGAGAACCGGAGGGACCGCAGGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCGTGAGAACCGGAGGGACCGCA-GGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|86423494|gb|CI062255.1|CI062255
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
EST: gi|88460532|gb|CI532005.1|CI532005
EST:     CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGG                         GAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT
genomic: CCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 75 (downstream exon)
Score: 13

GCATCACTGTGTGTCCTGTGCAATCCATGCTCACATCGTCCGTGTCCGCTCCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatc ... tattttgcagGAGGATAGGCCCCAAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGTGGAGCTGCTGCTCCTGCCCCCAACGTTGCTCGCACCTGATTGTCTCCGG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATCACTGTGTGTCCTGTGCAATCCATGCTCACATCGTCCGTGTCCGCTCCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGgtacctgatccccgcctcttaactattatatctagtgcttaattgatagtgtaattagtatatcatgatcggaacgatttcctttatctgttactgcaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccgcc