1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCGGCTCTCCCCCTGGCAGTGACATCATTTGTGTACGCTGAAGAGTACAAGGTCCACGCAGACATCATGAGCACAGGgtttgtttcttaaccaaatactgttaaggttcagaagtatttcaattctcttctgattaatgcaagtgcccatctgactgatcattttggatttctttttgtgccttgcag
species | Oryza sativa |
transcript | LOC_Os01g58860.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTTGTGTACGCTGAAGAGTACAAGGTCCACGCAGACATCATGAGCACAGG GGTTATTCTTGGGATATTTATATCACTTCCTGTGACAATTGTTTACTATATEST: gi|86905383|gb|CI285346.1|CI285346
genomic: TTTGTGTACGCTGAAGAGTACAAGGTCCACGCAGACATCATGAGCACAGGgtttgtttct ... tgccttgcagGGTTATTCTTGGGATATTTATATCACTTCCTGTGACAATTGTTTACTATAT
EST: TTTGTGTACGCTGAAGAGTACAAGGTCCACGCAGACATCATGAGCACAGG GGTTATTCTTGGGATATTTATATCACTTCCTGTGACAATTGTTTACTATATEST: gi|88469865|gb|CI407136.1|CI407136
genomic: TTTGTGTACGCTGAAGAGTACAAGGTCCACGCAGACATCATGAGCACAGGgtttgtttct ... tgccttgcagGGTTATTCTTGGGATATTTATATCACTTCCTGTGACAATTGTTTACTATAT
EST: CACGCAGACATCATGAGCACAGG GGTTATTCTTGGGATATTTATATCACTTCCTGTGACAATTGTTTACTATATEST: gi|88245865|gb|CI245714.1|CI245714
genomic: CACGCAGACATCATGAGCACAGGgtttgtttct ... tgccttgcagGGTTATTCTTGGGATATTTATATCACTTCCTGTGACAATTGTTTACTATAT
EST: TTTGTGTACGCTGAAGAGTACAAGGTCCACGCAGACATCATGAGCACAGG GGTTATTCTTGGGATATTTATATCACTTCCTGTGACAATTGTTTACTATATEST: gi|88983208|gb|CI020772.1|CI020772
genomic: TTTGTGTACGCTGAAGAGTACAAGGTCCACGCAGACATCATGAGCACAGGgtttgtttct ... tgccttgcagGGTTATTCTTGGGATATTTATATCACTTCCTGTGACAATTGTTTACTATAT
EST: TTTGTGTACGCTGAAGAGTACAAGGTCCACGCAGACATCATGAGCACAGG GGTTATTCTTGGGATATTTATATCACTTCCTGTGACAATTGTTTACTATAT
genomic: TTTGTGTACGCTGAAGAGTACAAGGTCCACGCAGACATCATGAGCACAGGgtttgtttct ... tgccttgcagGGTTATTCTTGGGATATTTATATCACTTCCTGTGACAATTGTTTACTATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGCTCTCCCCCTGGCAGTGACATCATTTGTGTACGCTGAAGAGTACAAGGTCCACGCAGACATCATGAGCACAGGgtttgtttcttaaccaaatactgttaaggttcagaagtatttcaattctcttctgattaatgcaagtgcccatctgactgatcattttggatttctttttgtgccttgcag
- - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - TGAAGA