1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCACGGCCTGATCCTCTCCATCAGGAAGGTGACGAGCAAGCCGGTCGTCGTGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcacaccgttgattttgtacttcttgttttggtttgtactgtacgtgttctttcgatcgattggtcgtacgatacacgcgttacgtgatgcaaatgcaatggtgcag
species | Oryza sativa |
transcript | LOC_Os01g56610.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86492691|gb|CI135324.1|CI135324
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86415108|gb|CI069511.1|CI069511
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86537322|gb|CI177528.1|CI177528
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86424410|gb|CI063171.1|CI063171
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|88540963|gb|CI469044.1|CI469044
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86523099|gb|CI163305.1|CI163305
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|88506570|gb|CI434076.1|CI434076
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTTTCGTGCGTCGGCAAGEST: gi|88486396|gb|CI423667.1|CI423667
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: GTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86256692|gb|CI061455.1|CI061455
genomic: GTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86424395|gb|CI063156.1|CI063156
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|88471712|gb|CI408983.1|CI408983
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: CGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|88905980|gb|CI089566.1|CI089566
genomic: CGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGGGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|88227236|gb|CI228349.1|CI228349
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|88509478|gb|CI436984.1|CI436984
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: CGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGAACTTCGTGTCGTGCGTCGGCAANEST: gi|86424714|gb|CI063475.1|CI063475
genomic: CGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86541346|gb|CI181552.1|CI181552
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86538996|gb|CI179202.1|CI179202
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|88217587|gb|CI217436.1|CI217436
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|88215071|gb|CI214920.1|CI214920
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86507429|gb|CI150062.1|CI150062
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86253677|gb|CI058404.1|CI058404
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAGCAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|89192894|gb|CI050192.1|CI050192
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86424192|gb|CI062953.1|CI062953
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86422548|gb|CI060121.1|CI060121
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|88225892|gb|CI225808.1|CI225808
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|88227696|gb|CI227176.1|CI227176
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|87015779|gb|CI277737.1|CI277737
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86498108|gb|CI140741.1|CI140741
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|88903585|gb|CI089123.1|CI089123
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGGGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86255171|gb|CI062076.1|CI062076
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCTAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86424289|gb|CI063050.1|CI063050
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86424644|gb|CI063405.1|CI063405
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|88535731|gb|CI465434.1|CI465434
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TTTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GATTCGGAGGGCGGCGCGTCGGAGACGGACTTCTTTTCGTGCGTCGGCAANEST: gi|88490785|gb|CI428057.1|CI428057
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: T-TACCCCAACAGCGGGGAGACGAACGTGGCCGAGACCAAAGAATGGGTG GAATCGGAGGGCGGCGC-TCGGGAGACGGAGTTCGTGTCGTGCGTCGGCAAEST: gi|218480277|gb|FG966421.1|FG966421
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTC-GGAGACGGACTTCGTGTCGTGCGTCGGCAA
EST: AAGAATGGGTG GAGTTCGGAGGCCGGCGCGTTCGGGAGACGGACTTCGTGTCGTGCGTCGGGEST: gi|86258386|gb|CI064739.1|CI064739
genomic: AAGAATGGGTGgtcagtgcac ... aatggtgcagGAG-TCGGAGGGCGGCGCG-TC-GGAGACGGACTTCGTGTCGTGCGTC-GG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAGEST: gi|86522797|gb|CI163003.1|CI163003
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
EST: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTG GAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
genomic: TGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcac ... aatggtgcagGAGTCGGAGGGCGGCGCGTCGGAGACGGACTTCGTGTCGTGCGTCGGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACGGCCTGATCCTCTCCATCAGGAAGGTGACGAGCAAGCCGGTCGTCGTGTACCCCAACAGCGGGGAGACCTACGTGGCCGAGACCAAAGAATGGGTGgtcagtgcacaccgttgattttgtacttcttgttttggtttgtactgtacgtgttctttcgatcgattggtcgtacgatacacgcgttacgtgatgcaaatgcaatggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA