1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCGgtaattcaagattcacaaactttcgaaaaataggaaagcacaaatttggccattgactatatattcttgccttcatctttcag
species | Oryza sativa |
transcript | LOC_Os01g55260.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCG GGACATTATTCGCGGEST: gi|58675193|gb|CK063880.1|CK063880
genomic: CCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCGgtaattcaag ... catctttcagGGACATTATTCGCGG
EST: CCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCG GGACATTATTCGCGGCAGTCCAGATGTGAAATGGGAAAGCATCAAAGGACTEST: gi|32948003|gb|BP184575.1|BP184575
genomic: CCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCGgtaattcaag ... catctttcagGGACATTATTCGCGGCAGTCCAGATGTGAAATGGGAAAGCATCAAAGGACT
EST: CCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCG GGACATTATTCGCGGCAGTCCAGATGTGAAATGGGAAAGCATCAAAGGACTEST: gi|88380889|gb|CI634914.1|CI634914
genomic: CCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCGgtaattcaag ... catctttcagGGACATTATTCGCGGCAGTCCAGATGTGAAATGGGAAAGCATCAAAGGACT
EST: CCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCG GGACATTATTCGCGGCAGTCCAGATGTGAAATEST: gi|88824884|gb|CI775449.1|CI775449
genomic: CCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCGgtaattcaag ... catctttcagGGACATTATTCGCGGCAGTCCAGATGTGAAAT
EST: CCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCG GGACATTATTCGCGGCAGTCEST: gi|88359857|gb|CI617768.1|CI617768
genomic: CCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCGgtaattcaag ... catctttcagGGACATTATTCGCGGCAGTC
EST: CCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCG GGACATTATTCGCGGCAGTCCAGATGTGAAATGGGAAAGCATC
genomic: CCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCGgtaattcaag ... catctttcagGGACATTATTCGCGGCAGTCCAGATGTGAAATGGGAAAGCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCGgtaattcaagattcacaaactttcgaaaaataggaaagcacaaatttggccattgactatatattcttgccttcatctttcag
- - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - AGCTGA