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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGCGTGGTGATCGTCGAGAAGCGCGTCAATGAGATCATCAACAGGTTGAACAAGACCAGGGTAGAGCGCCGGCCTGATCTGAAAGgtacacgcacgcacggacgacacgcatcgatcgatcgattgatcagatattcaggcattacacatacaattaaaatcgactaatccctttggcctttgtacgccgcag

Basic information

species Oryza sativa
transcript LOC_Os01g54670.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54670.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G055898_T01 (Zea mays), 5'ss of exon 4
GTTCGCGTGGTGATCGTCGAGAAGCGCGTCAATGAGATCATCAACAGGTTGAACAAGACCAGGGTAGAGCGCCGG---CCTGATCTGAAAGgtacacgcacgcacggacgacacgcatcgatcgatcgattgatcagatattcaggcattacacatacaattaaaatcgactaatccctttggcctttgtacgccgcag
|| |  ||| | || ||||||||||| ||||| ||||||||||||||| |||| || ||| ||||||| ||||||   || ||  |||||||| |    |   ||  || ||||  |      ||||     ||   |   | |   ||||  ||    ||||| |    ||    ||  | ||  | ||  || |   
GTACATGTGCTTATAGTCGAGAAGCGTGTCAACGAGATCATCAACAGGCTGAATAAAACCCGGGTAGAACGCCGGGCGCCAGACTTGAAAGgtgctt--aattactaac-acacagacacgctgatctgcccat-gcacgcttaattattat-cagttgattaataat--ctttctcccctcgcgctcgtgtgcag---