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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGAAGCTATCCTGCCTATTAGAGTAGTTCAGCCTAGATCTTTGACAGCTGTTGACAAGGCTGTCAATCATGTTGACGCTCCATGCATGATAGGTGTGgtgcgtgtcacttgtccttgttctgctgcctttgttctagctttgtttttaatggcaattctccaatgtcag

Basic information

species Oryza sativa
transcript LOC_Os01g54040.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54040.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G477200_T01 (Zea mays), 5'ss of exon 4
TCCTGAAGCTATCCTGCCTATTAGAGTAGTTCAGCCTAGATCTTTGACAGCTGTTGACAAGGCTGTCAATCATGTTGACGCTCCATGCATGATAGGTGTGgtgcgtgtcacttgtccttgttctgctgcctttgttctagctttgtttttaatggcaattctccaatgtcag
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TCCTGAAGCTTCCCTACATCTTCGAGTATTCCAGCCTAGATTAGTGGAAGCTATTGACAAGGCTATTAATCATGTTGATGCTCCATGCATGATAGGTGTGgtgagtgccatttctcattgttgtgatgcatt-gttacattgtcgttttaattggctatgacccaatgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29624260|gb|CB629271.1|CB629271
EST:     CTGTTGACAAGGCTGTCAATCATGTTGACGCTCCATGCATGATAGGT-T-                         ---CATGTTTACCAACACACTAATGATGGACACCATGCTATTGCTTCAGTT
genomic: CTGTTGACAAGGCTGTCAATCATGTTGACGCTCCATGCATGATAGGTGTGgtgcgtgtca ... ccaatgtcagGTTCATGTTTATCAACACACTAATGATGGACACCATGCTATTGCTTCAGTT