1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GACAAAGATGGTGGTTATGGCGGAGGACCTGGACAGgttttctcttaacctcaaacttttgggttccaaacttgtggctgggtaatatagctttgagttggttaacatttcacattagttgtcgttatcttaggca...
species | Oryza sativa |
transcript | LOC_Os01g53600.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCGGAGGACCTGGACAG TTGCCTCATCTTGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATAEST: gi|29673186|gb|CB669461.1|CB669461
genomic: GCGGAGGACCTGGACAGgttttctctt ... tttgtgctagTTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATA
EST: GACAAAGATGGTGGTTATGGCGGAGGACCTGGACAG TTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATAEST: gi|29674619|gb|CB670894.1|CB670894
genomic: GACAAAGATGGTGGTTATGGCGGAGGACCTGGACAGgttttctctt ... tttgtgctagTTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATA
EST: GACAAAGATGGTGGTTATGGCGGAGGACCTGGACAG TTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATAEST: gi|66924914|gb|CX111762.1|CX111762
genomic: GACAAAGATGGTGGTTATGGCGGAGGACCTGGACAGgttttctctt ... tttgtgctagTTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATA
EST: GACAAAGATGGTGGTTATGGCGGAGGACCTGGACAG TTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATAEST: gi|29674660|gb|CB670935.1|CB670935
genomic: GACAAAGATGGTGGTTATGGCGGAGGACCTGGACAGgttttctctt ... tttgtgctagTTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATA
EST: GACAAAGATGGTGGTTATGGCGGAGGACCTGGACAG TTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATA
genomic: GACAAAGATGGTGGTTATGGCGGAGGACCTGGACAGgttttctctt ... tttgtgctagTTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAAAGATGGTGGTTATGGCGGAGGACCTGGACAGgttttctcttaacctcaaacttttgggttccaaacttgtggctgggtaatatagctttgagttggttaacatttcacattagttgtcgttatcttaggca
- - AAGATG
- - - - TGGTGG
- - - - - - - - - - GGAGGA