1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTAGCCCATCAGATCCCAAAACTTTTCCATTCATCTTACTTGGGAACAAGATTGACGTAGATGGAGGGAAAAGCAGAGTGgtgagtttctcaagtatactatcaacttttgcctctatatgtgggactacatacttactattcacacag
species | Oryza sativa |
transcript | LOC_Os01g51700.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCATCTTACTTGGGAACAAGATTGACGTAGATGGAGGGAAAAGCAGAGTG GTTTCTGAGAAAAAAGCAATGGAGTGGTGTTCATCCAAAGGCAATATTCCTEST: gi|88216758|gb|CI216607.1|CI216607
genomic: TCATCTTACTTGGGAACAAGATTGACGTAGATGGAGGGAAAAGCAGAGTGgtgagtttct ... attcacacagGTTTCTGAGAAAAAAGCAATGGAGTGGTGTTCATCCAAAGGCAATATTCCT
EST: TCTTACTTGGGAACAAGATTGACGTAGATGGAGGGAAAAGCAGAGTG GTTTCTGAGAAAAAAGCAATGGAGTGGTGTTCATCCAAAGGCAATATTCCTEST: gi|87032794|gb|CI268289.1|CI268289
genomic: TCTTACTTGGGAACAAGATTGACGTAGATGGAGGGAAAAGCAGAGTGgtgagtttct ... attcacacagGTTTCTGAGAAAAAAGCAATGGAGTGGTGTTCATCCAAAGGCAATATTCCT
EST: TCATCTTACTTGGGAACAAGATTGACGTAGATGGAGGGAAAAGCAGAGTG GTTTCTGAGAAAAAAGCAATGGAGTGGTGTTCATCCAAAGGCAATATTCCTEST: gi|87035544|gb|CI190166.1|CI190166
genomic: TCATCTTACTTGGGAACAAGATTGACGTAGATGGAGGGAAAAGCAGAGTGgtgagtttct ... attcacacagGTTTCTGAGAAAAAAGCAATGGAGTGGTGTTCATCCAAAGGCAATATTCCT
EST: TCATCTTACTTGGGAACAAGATTGACGTAGATGGAGGGAAAAGCAGAGTG GTTTCTGAGAAAAAAGCAATGGAGTGGTGTTCATCCAAAGGCAATATTCCTEST: gi|87035485|gb|CI190107.1|CI190107
genomic: TCATCTTACTTGGGAACAAGATTGACGTAGATGGAGGGAAAAGCAGAGTGgtgagtttct ... attcacacagGTTTCTGAGAAAAAAGCAATGGAGTGGTGTTCATCCAAAGGCAATATTCCT
EST: TCATCTTACTTGGGAACAAGATTGACGTAGATGGAGGGAAAAGCAGAGTG GTTTCTGAGAAAAAAGCAATGGAGTGGTGTTCATCCAAAGGCAATATTCCT
genomic: TCATCTTACTTGGGAACAAGATTGACGTAGATGGAGGGAAAAGCAGAGTGgtgagtttct ... attcacacagGTTTCTGAGAAAAAAGCAATGGAGTGGTGTTCATCCAAAGGCAATATTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAGCCCATCAGATCCCAAAACTTTTCCATTCATCTTACTTGGGAACAAGATTGACGTAGATGGAGGGAAAAGCAGAGTGgtgagtttctcaagtatactatcaacttttgcctctatatgtgggactacatacttactattcacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG