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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGCTATTCCTCCACTTCCAACAACTTCACCCCCAGTTTTCCCACCTCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctctgaagcaatttttatacaagaactatatattttttatctgcttaccattttcctgtactgaaatatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g51290.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86876092|gb|CI325591.1|CI325591
EST:     TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAGGCCATACCCCAATA                         GACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
genomic: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctct ... aaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
EST: gi|86487913|gb|CI130546.1|CI130546
EST:     TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATA                         GACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
genomic: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctct ... aaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
EST: gi|89169847|gb|CI110206.1|CI110206
EST:     TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATA                         GACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
genomic: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctct ... aaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
EST: gi|396941635|gb|HO188292.1|HO188292
EST:     TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATA                         GACCAGCAGTGTCTCCAGTATCAATAATCCATCCCACCAACCATGGGAAGG
genomic: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctct ... aaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
EST: gi|87009778|gb|CI310881.1|CI310881
EST:     TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATA                         GACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
genomic: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctct ... aaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
EST: gi|94362946|gb|CI053107.1|CI053107
EST:     TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATA                         GACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
genomic: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctct ... aaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
EST: gi|88961131|gb|CI096534.1|CI096534
EST:     TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATA                         GACCAGCAGTGTCTCNAGCGTCAATAATCCATCCCACCAACCATGGGAAGG
genomic: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctct ... aaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
EST: gi|86423364|gb|CI060937.1|CI060937
EST:     TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATA                         GACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
genomic: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctct ... aaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG