1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGCCCCTTATCTGGTTGGTCTTGTTGTACAATTCGCATTCGAGCAGTATGCACGGCATCGGAAATCACCTTCTTGGCCAGTTATCCCTATCATCTTTAAGgtaacctggtgcttatatttatcctggtgctattggatcctgaaacaaaagcttaatccattgtgctttccttataatcaagtgtgcactggtgtgattt...
species | Oryza sativa |
transcript | LOC_Os01g50830.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CACGGCATCGGAAATCACCTTCTTGGCCAGTTATCCCTATCATCTTTAAG ATCTACAGGCTTCACCAACTGAACAGGGCAGCTCAGCTGGTGACAGCACTCEST: gi|38479193|gb|CF963326.1|CF963326
genomic: CACGGCATCGGAAATCACCTTCTTGGCCAGTTATCCCTATCATCTTTAAGgtaacctggt ... gtctttgcagATCTACAGGCTTCACCAACTGAACAGGGCAGCTCAGCTGGTGACAGCACTC
EST: CACGGCATCGGAAATCACCTTCTTGGCCAGTTATCCCTATCATCTTTAAG ATCTACAGGCTTCACCAACTGAACAGGGCAGCTCAGCTGGTGAGAGCACTCEST: gi|88472756|gb|CI410027.1|CI410027
genomic: CACGGCATCGGAAATCACCTTCTTGGCCAGTTATCCCTATCATCTTTAAGgtaacctggt ... gtctttgcagATCTACAGGCTTCACCAACTGAACAGGGCAGCTCAGCTGGTGACAGCACTC
EST: CACGGCATCGGAAATCACCTTCTTGGCCAGTTATCCCTATCATCTTTAAG ATCTACAGGCTTCACCAACTGAACAGGGCAGCTCAGCTGGTGACAGCACTC
genomic: CACGGCATCGGAAATCACCTTCTTGGCCAGTTATCCCTATCATCTTTAAGgtaacctggt ... gtctttgcagATCTACAGGCTTCACCAACTGAACAGGGCAGCTCAGCTGGTGACAGCACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCCCTTATCTGGTTGGTCTTGTTGTACAATTCGCATTCGAGCAGTATGCACGGCATCGGAAATCACCTTCTTGGCCAGTTATCCCTATCATCTTTAAGgtaacctggtgcttatatttatcctggtgctattggatcctgaaacaaaagcttaatccattgtgctttccttataatcaagtgtgcactggtgtgattt
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