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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCAGTGAATTATGATTTCACTAAGCTCAAGGATGAGCTGCAATTGTGTGCTCTGATCCTTTCATACTCACCAAAAAACGAAAGCACCTGGAGCCATAGgtacagcttgtcttttcacttgtcaagttgtcaaattatggaatttggggaaactctttcaggtcacctcttaaataatttagggattttttaggaaaaa...

Basic information

species Oryza sativa
transcript LOC_Os01g49060.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g49060.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G023638_T01 (Zea mays), 5'ss of exon 3
TATCAGTGAATTATGATTTCACTAAGCTCAAGGATGAGCTGCAATTGTGTGCTCTGATCCTTTCATACTCACCAAAAAACGAAAGCACCTGGAGCCATAGgtacagcttgtcttttcacttgtcaagttgtcaaattatggaatttggggaaac---tctttcaggtcacctct-----taaataatttagggattttttaggaaaaa-------------------------------------------
|||||| |   ||||||||||| |||||||||||||| ||||||||||||||  |||||||||| ||||| ||||| ||||| ||||| |||||||||||||||| |    |    ||  |  |   |||| ||   ||     ||   ||      ||||||||   |   |      |    | ||| | | |  ||| |  | ||                                           
TATCAGCGTTGTATGATTTCACAAAGCTCAAGGATGAACTGCAATTGTGTGCCTTGATCCTTTCCTACTCTCCAAAGAACGAGAGCACATGGAGCCATAGgtacaccactacaccccatcttgctc-ttgtgaagccatcttgcttattgacctctttctttcagacaattcccatctatttggactttggagctgattttgatataataaaactaaactgcatggagtttgaaataactgtctgccacag

upper sequence: LOC_Os01g49060.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G023638_T02 (Zea mays), 5'ss of exon 3
TATCAGTGAATTATGATTTCACTAAGCTCAAGGATGAGCTGCAATTGTGTGCTCTGATCCTTTCATACTCACCAAAAAACGAAAGCACCTGGAGCCATAGgtacagcttgtcttttcacttgtcaagttgtcaaattatggaatttggggaaactctttcaggtcacctcttaaataatttagggattttttaggaaaaa
|||||| |   ||||||||||| |||||||||||||| ||||||||||||||  |||||||||| ||||| ||||| ||||| ||||| |||||||||||||||| |    |    ||  |  |   |||| ||   ||     ||   ||  |||||||   |||                                  
TATCAGCGTTGTATGATTTCACAAAGCTCAAGGATGAACTGCAATTGTGTGCCTTGATCCTTTCCTACTCTCCAAAGAACGAGAGCACATGGAGCCATAGgtacaccactacaccccatcttgctc-ttgtgaagccatcttgcttattgac-ctctttctt-tcag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58686688|gb|CK075375.1|CK075375
EST:     GCTCTGATCCTTTCATACTCACCAAAAAACGAAAGCACCTGGAGCCATAG                         GAGATGGGTGATCAAGAAGGTTTCAGAGCACAACCAGGATGTGTCGGAGCT
genomic: GCTCTGATCCTTTCATACTCACCAAAAAACGAAAGCACCTGGAGCCATAGgtacagcttg ... cctactacagGAGATGGGTGATCAAGAAGGTTTCAGAGCACAACCAGGATGTGTCGGAGCT