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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTACAGCCTGCAGAGGCCATTCCAGGAGCTCGTGGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAGgtgattcgccggtttagcctatcttggtgactgggatatcagccgtactatcactaactaccatatatatgtcatacagcttggttgttaggcttctccc...

Basic information

species Oryza sativa
transcript LOC_Os01g48060.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88357640|gb|CI623694.1|CI623694
EST:     GGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAG                         GCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTT
genomic: GGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAGgtgattcgcc ... attgttacagGCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTT
EST: gi|29678647|gb|CB674922.1|CB674922
EST:     GGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAG                         GCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCCACA
genomic: GGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAGgtgattcgcc ... attgttacagGCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACA
EST: gi|33677338|gb|CF305577.1|CF305577
EST:     ACGGAATGGAGGTTCAGACATATCTATCGAG                         GCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACA
genomic: ACGGAATGGAGGTTCAGACATATCTATCGAGgtgattcgcc ... attgttacagGCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACA
EST: gi|58665936|gb|CK054622.1|CK054622
EST:     GGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAG                         GCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACA
genomic: GGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAGgtgattcgcc ... attgttacagGCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTACAGCCTGCAGAGGCCATTCCAGGAGCTCGTGGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAGgtgattcgccggtttagcctatcttggtgactgggatatcagccgtactatcactaactaccatatatatgtcatacagcttggttgttaggcttctccc

- - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG