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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTGAGAATTCATTCAGTAACAGTCACCAGAGAGTAGGATTAGCATTGTATGGATTCATGTGGCTCCAGCCGCTTATCGGTTTCTTCAGACCAGAAAGgtagaagaaaactactttctcatgattcttacaaagttttgtctctaggatttatcctttttgtgtttctgcag

Basic information

species Oryza sativa
transcript LOC_Os01g47635.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g47635.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G024448_T01 (Zea mays), 5'ss of exon 3
ACTTTGAGAATTCATTCAGTAACAGTCACCAGAGAGTAGGATTAGCATTGTATGGATTCATGTGGCTCCAGCCGCTTATCGGTTTCTTCAGACCAGAAAGgtagaagaaaactactttctcatgattcttacaaagttttgtctctaggatttatcctttttgtgtttctgcag------------------------------------------------------------------------
|||| ||||| || ||||| ||||| ||||| ||||| ||  | ||  |||||||| ||||||||||||||||  || |||| |||||||||||||||||||||||||| |  |  |    |||| | |  |||    ||  | | |    |     ||| | | | |    ||                                                                        
ACTTCGAGAACTCCTTCAGCAACAGCCACCAAAGAGTGGGGCTGGCGCTGTATGGAGTCATGTGGCTCCAGCCAATTCTCGGCTTCTTCAGACCAGAAAGgtagaagaagaaaatat----atgactttc-caatccatttgcaccacagctacctttttctatttcttccaagaaagcttatgcctagctacctacacggctacaccaccatctaaaccatctccttcctcatatatttctgcag