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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGTTAGATTGACAGATGAATTCATCGAACTTGCAAAGGAGAATACAGGCAACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTgtaagtcccttttagatgaatttgtaggttcgcttcacaaaatggtttgccaatatgataatcatacctatttttggatttgcattgtgatcttcaatgcttctttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g47262.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g47262.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G013625_T01 (Zea mays), 5'ss of exon 3
TCAGTTAGATTGACAGATGAATTCATCGAACTTGCAAAGGAGAATACAGGCAACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTgtaagtcccttttagatgaatttgtaggttcgcttcacaaaatggtttgccaatatgataatcatacctatttttggatttgcattgtga-tcttcaatgcttctttgcag
||||| ||||||||||  |||||||| || |||||||||||||||||| |||| ||| |||||||||||||||| || ||||||||||||||||||           |||   |  ||            ||    || || || ||| ||  ||||||| || |    ||  ||  ||| | ||  ||| |||| |||||
TCAGTGAGATTGACAGCCGAATTCATGGAGCTTGCAAAGGAGAATACAAGCAATAATCTAGAGACTTGTGGAATTCTTGGTGCTTCATTTgtaagt-----------gaa---gcgggc-----------aacaagttacctatgtgacaagaatacctaattgtcagattagatcttgagtattttatgtttctatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|44677600|gb|CR291034.1|CR291034
EST:     AGAATACAGGCAACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTT                         AGAGATGGGACTTACTATGTGACTATGTTGATCATACCGAAGCAAGAAGCA
genomic: AGAATACAGGCAACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTgtaagtccct ... ttctttgcagAGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCA
EST: gi|33658750|gb|CF281363.1|CF281363
EST:     AGAATACAGGCAACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTT                         AGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCA
genomic: AGAATACAGGCAACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTgtaagtccct ... ttctttgcagAGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCA
EST: gi|29670555|gb|CB666830.1|CB666830
EST:     CAACAATGTAGAGACTCGTGGAATCCTAGGTGCTTCATTT                         AGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCA
genomic: CAACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTgtaagtccct ... ttctttgcagAGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCA